Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00641 and SMc00640 are separated by 81 nucleotides SMc00640 and SMc00639 are separated by 137 nucleotides
SMc00641: SMc00641 - D-3-phosphoglycerate dehydrogenase, at 2,935,226 to 2,936,821
SMc00641
SMc00640: SMc00640 - phosphoserine aminotransferase, at 2,936,903 to 2,938,081
SMc00640
SMc00639: SMc00639 - heat resistant agglutinin 1 signal peptide protein, at 2,938,219 to 2,938,992
SMc00639
Position (kb)
2936
2937
2938
2939 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2935.911 kb on + strand, within SMc00641 at 2935.912 kb on - strand, within SMc00641 at 2936.138 kb on - strand, within SMc00641 at 2936.307 kb on + strand, within SMc00641 at 2936.307 kb on + strand, within SMc00641 at 2936.685 kb on + strand at 2936.802 kb on - strand at 2936.802 kb on - strand at 2937.163 kb on + strand, within SMc00640 at 2937.163 kb on + strand, within SMc00640 at 2937.310 kb on + strand, within SMc00640 at 2937.311 kb on - strand, within SMc00640 at 2937.312 kb on + strand, within SMc00640 at 2937.312 kb on + strand, within SMc00640 at 2937.313 kb on - strand, within SMc00640 at 2937.341 kb on - strand, within SMc00640 at 2937.365 kb on - strand, within SMc00640 at 2937.365 kb on - strand, within SMc00640 at 2937.365 kb on - strand, within SMc00640 at 2937.429 kb on + strand, within SMc00640 at 2937.429 kb on + strand, within SMc00640 at 2937.429 kb on + strand, within SMc00640 at 2937.430 kb on - strand, within SMc00640 at 2937.430 kb on - strand, within SMc00640 at 2937.430 kb on - strand, within SMc00640 at 2937.430 kb on - strand, within SMc00640 at 2937.729 kb on - strand, within SMc00640 at 2937.913 kb on + strand, within SMc00640 at 2938.042 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.081 kb on + strand at 2938.082 kb on - strand at 2938.082 kb on - strand at 2938.082 kb on - strand at 2938.086 kb on + strand at 2938.086 kb on + strand at 2938.086 kb on + strand at 2938.098 kb on + strand at 2938.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 2,935,911 + SMc00641 0.43 -0.6 2,935,912 - SMc00641 0.43 -5.1 2,936,138 - SMc00641 0.57 -4.5 2,936,307 + SMc00641 0.68 -3.9 2,936,307 + SMc00641 0.68 -1.2 2,936,685 + -2.2 2,936,802 - -2.4 2,936,802 - -4.1 2,937,163 + SMc00640 0.22 -2.9 2,937,163 + SMc00640 0.22 -2.9 2,937,310 + SMc00640 0.35 -2.3 2,937,311 - SMc00640 0.35 -5.1 2,937,312 + SMc00640 0.35 -3.1 2,937,312 + SMc00640 0.35 -4.7 2,937,313 - SMc00640 0.35 +0.4 2,937,341 - SMc00640 0.37 -2.8 2,937,365 - SMc00640 0.39 -5.2 2,937,365 - SMc00640 0.39 -3.2 2,937,365 - SMc00640 0.39 -2.7 2,937,429 + SMc00640 0.45 -4.9 2,937,429 + SMc00640 0.45 -1.9 2,937,429 + SMc00640 0.45 -2.1 2,937,430 - SMc00640 0.45 -3.5 2,937,430 - SMc00640 0.45 -0.2 2,937,430 - SMc00640 0.45 -5.2 2,937,430 - SMc00640 0.45 -2.2 2,937,729 - SMc00640 0.70 -4.4 2,937,913 + SMc00640 0.86 -0.8 2,938,042 + -2.5 2,938,081 + -4.7 2,938,081 + -1.8 2,938,081 + -4.4 2,938,081 + -1.9 2,938,081 + -1.2 2,938,081 + -2.2 2,938,081 + -3.0 2,938,081 + -3.6 2,938,081 + -0.6 2,938,082 - -2.4 2,938,082 - +1.4 2,938,082 - -4.3 2,938,086 + -3.5 2,938,086 + -0.2 2,938,086 + -4.3 2,938,098 + -1.1 2,938,098 + -1.4
Or see this region's nucleotide sequence