Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00294 and SMc00295 are separated by 124 nucleotides SMc00295 and SMc00296 are separated by 82 nucleotides
SMc00294: SMc00294 - aminotransferase, at 1,866,274 to 1,867,491
SMc00294
SMc00295: SMc00295 - hypothetical protein, at 1,867,616 to 1,868,050
SMc00295
SMc00296: SMc00296 - POLY3-hydroxybutyrate polymerase, at 1,868,133 to 1,869,968
SMc00296
Position (kb)
1867
1868
1869 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1866.696 kb on - strand, within SMc00294 at 1866.860 kb on + strand, within SMc00294 at 1866.861 kb on - strand, within SMc00294 at 1866.873 kb on - strand, within SMc00294 at 1866.933 kb on - strand, within SMc00294 at 1866.974 kb on + strand, within SMc00294 at 1867.116 kb on - strand, within SMc00294 at 1867.250 kb on + strand, within SMc00294 at 1867.250 kb on + strand, within SMc00294 at 1867.250 kb on + strand, within SMc00294 at 1867.251 kb on - strand, within SMc00294 at 1867.251 kb on - strand, within SMc00294 at 1867.253 kb on + strand, within SMc00294 at 1867.253 kb on + strand, within SMc00294 at 1867.253 kb on + strand, within SMc00294 at 1867.254 kb on - strand, within SMc00294 at 1867.301 kb on + strand, within SMc00294 at 1867.423 kb on - strand at 1867.454 kb on + strand at 1867.455 kb on - strand at 1867.476 kb on + strand at 1867.618 kb on - strand at 1867.693 kb on - strand, within SMc00295 at 1867.822 kb on - strand, within SMc00295 at 1868.199 kb on + strand at 1868.199 kb on + strand at 1868.199 kb on + strand at 1868.199 kb on + strand at 1868.312 kb on + strand at 1868.312 kb on + strand at 1868.432 kb on + strand, within SMc00296 at 1868.565 kb on + strand, within SMc00296 at 1868.628 kb on - strand, within SMc00296 at 1868.650 kb on - strand, within SMc00296 at 1868.650 kb on - strand, within SMc00296 at 1868.650 kb on - strand, within SMc00296 at 1868.713 kb on - strand, within SMc00296 at 1868.713 kb on - strand, within SMc00296 at 1868.713 kb on - strand, within SMc00296 at 1868.780 kb on - strand, within SMc00296 at 1868.780 kb on - strand, within SMc00296 at 1868.904 kb on + strand, within SMc00296 at 1868.905 kb on - strand, within SMc00296
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,866,696 - SMc00294 0.35 -1.6 1,866,860 + SMc00294 0.48 -4.0 1,866,861 - SMc00294 0.48 -1.0 1,866,873 - SMc00294 0.49 +0.5 1,866,933 - SMc00294 0.54 +1.2 1,866,974 + SMc00294 0.57 -3.4 1,867,116 - SMc00294 0.69 -0.0 1,867,250 + SMc00294 0.80 -2.2 1,867,250 + SMc00294 0.80 -3.0 1,867,250 + SMc00294 0.80 -3.6 1,867,251 - SMc00294 0.80 +0.7 1,867,251 - SMc00294 0.80 -1.5 1,867,253 + SMc00294 0.80 -5.0 1,867,253 + SMc00294 0.80 -4.2 1,867,253 + SMc00294 0.80 -3.4 1,867,254 - SMc00294 0.80 -2.0 1,867,301 + SMc00294 0.84 -3.7 1,867,423 - -1.6 1,867,454 + -1.2 1,867,455 - -1.9 1,867,476 + -2.2 1,867,618 - -0.6 1,867,693 - SMc00295 0.18 +1.1 1,867,822 - SMc00295 0.47 -3.6 1,868,199 + -1.5 1,868,199 + +1.3 1,868,199 + +0.6 1,868,199 + +0.3 1,868,312 + -1.3 1,868,312 + -2.1 1,868,432 + SMc00296 0.16 +1.1 1,868,565 + SMc00296 0.24 -1.2 1,868,628 - SMc00296 0.27 +0.1 1,868,650 - SMc00296 0.28 -0.1 1,868,650 - SMc00296 0.28 -1.4 1,868,650 - SMc00296 0.28 -2.3 1,868,713 - SMc00296 0.32 -1.2 1,868,713 - SMc00296 0.32 -0.9 1,868,713 - SMc00296 0.32 -1.1 1,868,780 - SMc00296 0.35 +1.7 1,868,780 - SMc00296 0.35 +0.5 1,868,904 + SMc00296 0.42 -2.0 1,868,905 - SMc00296 0.42 -0.5
Or see this region's nucleotide sequence