Strain Fitness in Sinorhizobium meliloti 1021 around SMc00295

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00294 and SMc00295 are separated by 124 nucleotidesSMc00295 and SMc00296 are separated by 82 nucleotides SMc00294: SMc00294 - aminotransferase, at 1,866,274 to 1,867,491 SMc00294 SMc00295: SMc00295 - hypothetical protein, at 1,867,616 to 1,868,050 SMc00295 SMc00296: SMc00296 - POLY3-hydroxybutyrate polymerase, at 1,868,133 to 1,869,968 SMc00296 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1866.696 kb on - strand, within SMc00294at 1866.860 kb on + strand, within SMc00294at 1866.861 kb on - strand, within SMc00294at 1866.873 kb on - strand, within SMc00294at 1866.933 kb on - strand, within SMc00294at 1866.974 kb on + strand, within SMc00294at 1867.116 kb on - strand, within SMc00294at 1867.250 kb on + strand, within SMc00294at 1867.250 kb on + strand, within SMc00294at 1867.250 kb on + strand, within SMc00294at 1867.251 kb on - strand, within SMc00294at 1867.251 kb on - strand, within SMc00294at 1867.253 kb on + strand, within SMc00294at 1867.253 kb on + strand, within SMc00294at 1867.253 kb on + strand, within SMc00294at 1867.254 kb on - strand, within SMc00294at 1867.301 kb on + strand, within SMc00294at 1867.423 kb on - strandat 1867.454 kb on + strandat 1867.455 kb on - strandat 1867.476 kb on + strandat 1867.618 kb on - strandat 1867.693 kb on - strand, within SMc00295at 1867.822 kb on - strand, within SMc00295at 1868.199 kb on + strandat 1868.199 kb on + strandat 1868.199 kb on + strandat 1868.199 kb on + strandat 1868.312 kb on + strandat 1868.312 kb on + strandat 1868.432 kb on + strand, within SMc00296at 1868.565 kb on + strand, within SMc00296at 1868.628 kb on - strand, within SMc00296at 1868.650 kb on - strand, within SMc00296at 1868.650 kb on - strand, within SMc00296at 1868.650 kb on - strand, within SMc00296at 1868.713 kb on - strand, within SMc00296at 1868.713 kb on - strand, within SMc00296at 1868.713 kb on - strand, within SMc00296at 1868.780 kb on - strand, within SMc00296at 1868.780 kb on - strand, within SMc00296at 1868.904 kb on + strand, within SMc00296at 1868.905 kb on - strand, within SMc00296

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,866,696 - SMc00294 0.35 -1.6
1,866,860 + SMc00294 0.48 -4.0
1,866,861 - SMc00294 0.48 -1.0
1,866,873 - SMc00294 0.49 +0.5
1,866,933 - SMc00294 0.54 +1.2
1,866,974 + SMc00294 0.57 -3.4
1,867,116 - SMc00294 0.69 -0.0
1,867,250 + SMc00294 0.80 -2.2
1,867,250 + SMc00294 0.80 -3.0
1,867,250 + SMc00294 0.80 -3.6
1,867,251 - SMc00294 0.80 +0.7
1,867,251 - SMc00294 0.80 -1.5
1,867,253 + SMc00294 0.80 -5.0
1,867,253 + SMc00294 0.80 -4.2
1,867,253 + SMc00294 0.80 -3.4
1,867,254 - SMc00294 0.80 -2.0
1,867,301 + SMc00294 0.84 -3.7
1,867,423 - -1.6
1,867,454 + -1.2
1,867,455 - -1.9
1,867,476 + -2.2
1,867,618 - -0.6
1,867,693 - SMc00295 0.18 +1.1
1,867,822 - SMc00295 0.47 -3.6
1,868,199 + -1.5
1,868,199 + +1.3
1,868,199 + +0.6
1,868,199 + +0.3
1,868,312 + -1.3
1,868,312 + -2.1
1,868,432 + SMc00296 0.16 +1.1
1,868,565 + SMc00296 0.24 -1.2
1,868,628 - SMc00296 0.27 +0.1
1,868,650 - SMc00296 0.28 -0.1
1,868,650 - SMc00296 0.28 -1.4
1,868,650 - SMc00296 0.28 -2.3
1,868,713 - SMc00296 0.32 -1.2
1,868,713 - SMc00296 0.32 -0.9
1,868,713 - SMc00296 0.32 -1.1
1,868,780 - SMc00296 0.35 +1.7
1,868,780 - SMc00296 0.35 +0.5
1,868,904 + SMc00296 0.42 -2.0
1,868,905 - SMc00296 0.42 -0.5

Or see this region's nucleotide sequence