Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00183 and SMc00182 are separated by 78 nucleotides SMc00182 and SMc00196 overlap by 4 nucleotides SMc00196 and SMc00181 are separated by 200 nucleotides SMc00181 and SMc00180 are separated by 202 nucleotides
SMc00183: SMc00183 - hypothetical protein, at 1,980,720 to 1,981,292
SMc00183
SMc00182: SMc00182 - transcriptional regulator, at 1,981,371 to 1,981,856
SMc00182
SMc00196: SMc00196 - transporter, at 1,981,853 to 1,982,980
SMc00196
SMc00181: SMc00181 - hypothetical protein, at 1,983,181 to 1,983,441
SMc00181
SMc00180: SMc00180 - coproporphyrinogen III oxidase, at 1,983,644 to 1,984,555
SMc00180
Position (kb)
1981
1982
1983 Strain fitness (log2 ratio)
-2
-1
0
1 at 1980.948 kb on + strand, within SMc00183 at 1980.948 kb on + strand, within SMc00183 at 1980.949 kb on - strand, within SMc00183 at 1980.970 kb on + strand, within SMc00183 at 1980.970 kb on + strand, within SMc00183 at 1981.009 kb on + strand, within SMc00183 at 1981.009 kb on + strand, within SMc00183 at 1981.009 kb on + strand, within SMc00183 at 1981.057 kb on + strand, within SMc00183 at 1981.058 kb on - strand, within SMc00183 at 1981.058 kb on - strand, within SMc00183 at 1981.058 kb on - strand, within SMc00183 at 1981.261 kb on + strand at 1981.394 kb on + strand at 1981.395 kb on - strand at 1981.395 kb on - strand at 1981.568 kb on + strand, within SMc00182 at 1981.854 kb on + strand at 1981.854 kb on + strand at 1981.855 kb on - strand at 1981.855 kb on - strand at 1981.876 kb on + strand at 1981.876 kb on + strand at 1982.112 kb on + strand, within SMc00196 at 1982.112 kb on + strand, within SMc00196 at 1982.112 kb on + strand, within SMc00196 at 1982.113 kb on - strand, within SMc00196 at 1982.362 kb on + strand, within SMc00196 at 1982.363 kb on - strand, within SMc00196 at 1982.751 kb on + strand, within SMc00196 at 1982.848 kb on - strand, within SMc00196 at 1982.910 kb on + strand at 1982.910 kb on + strand at 1983.121 kb on + strand at 1983.122 kb on - strand at 1983.122 kb on - strand at 1983.122 kb on - strand at 1983.264 kb on - strand, within SMc00181 at 1983.430 kb on + strand at 1983.448 kb on + strand at 1983.448 kb on + strand at 1983.448 kb on + strand at 1983.466 kb on - strand at 1983.483 kb on - strand at 1983.483 kb on - strand at 1983.483 kb on - strand at 1983.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,980,948 + SMc00183 0.40 +0.3 1,980,948 + SMc00183 0.40 -0.5 1,980,949 - SMc00183 0.40 -0.3 1,980,970 + SMc00183 0.44 +0.6 1,980,970 + SMc00183 0.44 -0.1 1,981,009 + SMc00183 0.50 +1.3 1,981,009 + SMc00183 0.50 -0.2 1,981,009 + SMc00183 0.50 +1.1 1,981,057 + SMc00183 0.59 +0.1 1,981,058 - SMc00183 0.59 -0.4 1,981,058 - SMc00183 0.59 -1.3 1,981,058 - SMc00183 0.59 -0.2 1,981,261 + -0.2 1,981,394 + -0.5 1,981,395 - -0.3 1,981,395 - -1.2 1,981,568 + SMc00182 0.41 +0.8 1,981,854 + -0.1 1,981,854 + -1.5 1,981,855 - +1.7 1,981,855 - +0.1 1,981,876 + -0.1 1,981,876 + -1.3 1,982,112 + SMc00196 0.23 +0.6 1,982,112 + SMc00196 0.23 -0.8 1,982,112 + SMc00196 0.23 +0.1 1,982,113 - SMc00196 0.23 -0.4 1,982,362 + SMc00196 0.45 -0.9 1,982,363 - SMc00196 0.45 -0.2 1,982,751 + SMc00196 0.80 -0.3 1,982,848 - SMc00196 0.88 +0.9 1,982,910 + -0.1 1,982,910 + -2.5 1,983,121 + -0.2 1,983,122 - +0.1 1,983,122 - +0.4 1,983,122 - -1.4 1,983,264 - SMc00181 0.32 +1.1 1,983,430 + -0.1 1,983,448 + -1.4 1,983,448 + +0.9 1,983,448 + -1.5 1,983,466 - +0.4 1,983,483 - -0.9 1,983,483 - -0.3 1,983,483 - -0.5 1,983,574 + +0.7
Or see this region's nucleotide sequence