Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1301 and SMa1302 are separated by 311 nucleotides SMa1302 and SMa1303 are separated by 10 nucleotides
SMa1301: SMa1301 - Permease, at 709,700 to 710,926
SMa1301
SMa1302: SMa1302 - VirB11-like ATPase, at 711,238 to 712,227
SMa1302
SMa1303: SMa1303 - VirB10-like transmembrane secretion protein, at 712,238 to 713,410
SMa1303
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1
2
3 at 710.265 kb on + strand, within SMa1301 at 710.266 kb on - strand, within SMa1301 at 710.378 kb on + strand, within SMa1301 at 710.432 kb on + strand, within SMa1301 at 710.432 kb on + strand, within SMa1301 at 710.764 kb on + strand, within SMa1301 at 710.764 kb on + strand, within SMa1301 at 710.765 kb on - strand, within SMa1301 at 711.039 kb on + strand at 711.040 kb on - strand at 711.070 kb on - strand at 711.117 kb on + strand at 711.117 kb on + strand at 711.117 kb on + strand at 711.129 kb on + strand at 711.252 kb on - strand at 711.301 kb on + strand at 711.301 kb on + strand at 711.313 kb on + strand at 711.314 kb on - strand at 711.426 kb on + strand, within SMa1302 at 711.427 kb on - strand, within SMa1302 at 711.431 kb on - strand, within SMa1302 at 711.431 kb on - strand, within SMa1302 at 711.468 kb on - strand, within SMa1302 at 711.470 kb on + strand, within SMa1302 at 711.470 kb on + strand, within SMa1302 at 711.471 kb on - strand, within SMa1302 at 711.471 kb on - strand, within SMa1302 at 711.588 kb on - strand, within SMa1302 at 711.592 kb on + strand, within SMa1302 at 711.593 kb on - strand, within SMa1302 at 711.593 kb on - strand, within SMa1302 at 711.619 kb on - strand, within SMa1302 at 711.789 kb on - strand, within SMa1302 at 711.789 kb on - strand, within SMa1302 at 712.085 kb on + strand, within SMa1302 at 712.086 kb on - strand, within SMa1302 at 712.135 kb on + strand at 712.135 kb on + strand at 712.148 kb on + strand at 712.240 kb on - strand at 712.240 kb on - strand at 712.329 kb on + strand at 712.329 kb on + strand at 712.330 kb on - strand at 712.330 kb on - strand at 712.330 kb on - strand at 712.506 kb on + strand, within SMa1303 at 712.506 kb on + strand, within SMa1303 at 712.507 kb on - strand, within SMa1303 at 712.578 kb on + strand, within SMa1303 at 712.578 kb on + strand, within SMa1303 at 712.711 kb on - strand, within SMa1303 at 712.838 kb on - strand, within SMa1303 at 713.062 kb on + strand, within SMa1303 at 713.064 kb on + strand, within SMa1303 at 713.065 kb on - strand, within SMa1303 at 713.199 kb on - strand, within SMa1303
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 710,265 + SMa1301 0.46 +3.2 710,266 - SMa1301 0.46 -0.1 710,378 + SMa1301 0.55 -0.6 710,432 + SMa1301 0.60 -0.2 710,432 + SMa1301 0.60 -0.2 710,764 + SMa1301 0.87 -0.1 710,764 + SMa1301 0.87 -0.5 710,765 - SMa1301 0.87 +0.5 711,039 + -1.6 711,040 - -1.7 711,070 - +0.5 711,117 + +0.2 711,117 + +0.4 711,117 + -1.0 711,129 + -0.3 711,252 - +0.6 711,301 + +0.7 711,301 + +1.1 711,313 + -0.7 711,314 - +0.6 711,426 + SMa1302 0.19 +1.2 711,427 - SMa1302 0.19 +0.5 711,431 - SMa1302 0.19 -0.2 711,431 - SMa1302 0.19 +0.8 711,468 - SMa1302 0.23 +0.8 711,470 + SMa1302 0.23 -1.7 711,470 + SMa1302 0.23 +0.6 711,471 - SMa1302 0.24 +2.4 711,471 - SMa1302 0.24 -0.2 711,588 - SMa1302 0.35 +0.1 711,592 + SMa1302 0.36 +0.1 711,593 - SMa1302 0.36 +0.3 711,593 - SMa1302 0.36 +0.2 711,619 - SMa1302 0.38 -1.1 711,789 - SMa1302 0.56 +0.7 711,789 - SMa1302 0.56 +0.3 712,085 + SMa1302 0.86 -0.1 712,086 - SMa1302 0.86 +0.0 712,135 + +0.4 712,135 + +0.4 712,148 + -0.7 712,240 - -1.7 712,240 - -0.5 712,329 + -0.3 712,329 + +0.8 712,330 - -1.4 712,330 - +0.3 712,330 - +0.5 712,506 + SMa1303 0.23 -0.9 712,506 + SMa1303 0.23 -0.6 712,507 - SMa1303 0.23 -0.4 712,578 + SMa1303 0.29 +0.4 712,578 + SMa1303 0.29 +0.2 712,711 - SMa1303 0.40 -1.7 712,838 - SMa1303 0.51 +0.9 713,062 + SMa1303 0.70 +0.1 713,064 + SMa1303 0.70 +0.5 713,065 - SMa1303 0.71 -0.6 713,199 - SMa1303 0.82 -0.1
Or see this region's nucleotide sequence