Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1146 and SMa1147 are separated by 77 nucleotides SMa1147 and SMa1149 are separated by 137 nucleotides
SMa1146: SMa1146 - hypothetical protein, at 623,735 to 626,434
SMa1146
SMa1147: SMa1147 - hypothetical protein, at 626,512 to 627,336
SMa1147
SMa1149: SMa1149 - hypothetical protein, at 627,474 to 628,307
SMa1149
Position (kb) 626
627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 625.528 kb on - strand, within SMa1146 at 625.755 kb on + strand at 625.950 kb on - strand, within SMa1146 at 626.073 kb on + strand, within SMa1146 at 626.165 kb on + strand at 626.256 kb on - strand at 626.448 kb on - strand at 626.466 kb on + strand at 626.466 kb on + strand at 626.466 kb on + strand at 626.467 kb on - strand at 626.518 kb on + strand at 626.567 kb on + strand at 626.656 kb on + strand, within SMa1147 at 626.702 kb on + strand, within SMa1147 at 626.759 kb on + strand, within SMa1147 at 626.782 kb on + strand, within SMa1147 at 626.782 kb on + strand, within SMa1147 at 627.027 kb on + strand at 627.050 kb on + strand, within SMa1147 at 627.051 kb on - strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.059 kb on + strand, within SMa1147 at 627.121 kb on + strand, within SMa1147 at 627.141 kb on - strand, within SMa1147 at 627.196 kb on - strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.252 kb on + strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.253 kb on - strand, within SMa1147 at 627.286 kb on - strand at 627.321 kb on - strand at 627.377 kb on + strand at 627.378 kb on - strand at 627.429 kb on + strand at 627.480 kb on + strand at 627.481 kb on - strand at 627.481 kb on - strand at 627.481 kb on - strand at 627.499 kb on + strand at 627.745 kb on - strand, within SMa1149 at 627.776 kb on - strand, within SMa1149 at 627.803 kb on + strand, within SMa1149 at 627.803 kb on + strand, within SMa1149 at 628.092 kb on + strand, within SMa1149 at 628.092 kb on + strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.311 kb on - strand at 628.311 kb on - strand at 628.326 kb on - strand at 628.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 625,528 - SMa1146 0.66 -0.1 625,755 + +0.1 625,950 - SMa1146 0.82 +0.3 626,073 + SMa1146 0.87 +0.1 626,165 + +1.4 626,256 - -0.9 626,448 - +0.1 626,466 + +0.1 626,466 + +0.7 626,466 + -0.2 626,467 - +0.6 626,518 + -0.2 626,567 + +0.1 626,656 + SMa1147 0.17 -1.3 626,702 + SMa1147 0.23 +0.5 626,759 + SMa1147 0.30 -0.1 626,782 + SMa1147 0.33 +0.7 626,782 + SMa1147 0.33 -1.0 627,027 + +0.3 627,050 + SMa1147 0.65 -0.1 627,051 - SMa1147 0.65 +0.2 627,059 + SMa1147 0.66 +2.1 627,059 + SMa1147 0.66 +0.8 627,059 + SMa1147 0.66 +0.0 627,121 + SMa1147 0.74 +0.6 627,141 - SMa1147 0.76 +0.4 627,196 - SMa1147 0.83 -0.1 627,252 + SMa1147 0.90 -0.4 627,252 + SMa1147 0.90 -0.9 627,252 + SMa1147 0.90 +0.1 627,253 - SMa1147 0.90 +0.2 627,253 - SMa1147 0.90 +0.2 627,253 - SMa1147 0.90 +0.0 627,253 - SMa1147 0.90 +0.8 627,253 - SMa1147 0.90 +2.3 627,253 - SMa1147 0.90 +0.6 627,286 - -1.4 627,321 - +0.2 627,377 + +0.1 627,378 - -1.1 627,429 + +0.0 627,480 + +0.1 627,481 - -0.5 627,481 - +0.2 627,481 - -1.8 627,499 + -0.2 627,745 - SMa1149 0.32 -3.7 627,776 - SMa1149 0.36 +0.1 627,803 + SMa1149 0.39 +0.1 627,803 + SMa1149 0.39 +3.9 628,092 + SMa1149 0.74 +0.8 628,092 + SMa1149 0.74 -0.9 628,093 - SMa1149 0.74 -0.3 628,093 - SMa1149 0.74 -0.4 628,097 - SMa1149 0.75 +1.1 628,097 - SMa1149 0.75 +0.8 628,311 - -0.0 628,311 - -1.1 628,326 - +0.4 628,328 - +0.7
Or see this region's nucleotide sequence