Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1111 and SMa1113 are separated by 390 nucleotides SMa1113 and SMa1115 are separated by 232 nucleotides
SMa1111: SMa1111 - hypothetical protein, at 604,938 to 605,630
SMa1111
SMa1113: SMa1113 - hypothetical protein, at 606,021 to 606,329
SMa1113
SMa1115: SMa1115 - Mn2+/Fe2+ transporter NRAMP family, at 606,562 to 607,890
SMa1115
Position (kb) 606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 605.336 kb on + strand, within SMa1111 at 605.337 kb on - strand, within SMa1111 at 605.337 kb on - strand, within SMa1111 at 605.350 kb on + strand, within SMa1111 at 605.390 kb on + strand, within SMa1111 at 605.391 kb on - strand, within SMa1111 at 605.424 kb on + strand, within SMa1111 at 605.497 kb on + strand, within SMa1111 at 605.988 kb on - strand at 605.988 kb on - strand at 606.069 kb on + strand, within SMa1113 at 606.070 kb on - strand, within SMa1113 at 606.072 kb on + strand, within SMa1113 at 606.169 kb on - strand, within SMa1113 at 606.281 kb on + strand, within SMa1113 at 606.281 kb on + strand, within SMa1113 at 606.282 kb on - strand, within SMa1113 at 606.282 kb on - strand, within SMa1113 at 606.298 kb on - strand, within SMa1113 at 606.318 kb on + strand at 606.370 kb on - strand at 606.377 kb on + strand at 606.496 kb on + strand at 606.500 kb on + strand at 606.508 kb on - strand at 606.508 kb on - strand at 606.533 kb on - strand at 606.725 kb on - strand, within SMa1115 at 606.725 kb on - strand, within SMa1115 at 607.041 kb on - strand, within SMa1115 at 607.041 kb on - strand, within SMa1115 at 607.054 kb on + strand, within SMa1115 at 607.055 kb on - strand, within SMa1115 at 607.055 kb on - strand, within SMa1115 at 607.229 kb on - strand, within SMa1115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 605,336 + SMa1111 0.57 +2.6 605,337 - SMa1111 0.58 +0.0 605,337 - SMa1111 0.58 -2.2 605,350 + SMa1111 0.59 +0.1 605,390 + SMa1111 0.65 +0.4 605,391 - SMa1111 0.65 +0.3 605,424 + SMa1111 0.70 +0.5 605,497 + SMa1111 0.81 +2.6 605,988 - -1.8 605,988 - -1.7 606,069 + SMa1113 0.16 -0.6 606,070 - SMa1113 0.16 +0.3 606,072 + SMa1113 0.17 +2.3 606,169 - SMa1113 0.48 -1.4 606,281 + SMa1113 0.84 -0.4 606,281 + SMa1113 0.84 +1.6 606,282 - SMa1113 0.84 +1.5 606,282 - SMa1113 0.84 +1.1 606,298 - SMa1113 0.90 +0.3 606,318 + +0.9 606,370 - +0.0 606,377 + -0.0 606,496 + -0.5 606,500 + -0.8 606,508 - +0.7 606,508 - -1.2 606,533 - +0.4 606,725 - SMa1115 0.12 -0.6 606,725 - SMa1115 0.12 +0.3 607,041 - SMa1115 0.36 -0.4 607,041 - SMa1115 0.36 -0.9 607,054 + SMa1115 0.37 +0.8 607,055 - SMa1115 0.37 +0.0 607,055 - SMa1115 0.37 +0.2 607,229 - SMa1115 0.50 -0.6
Or see this region's nucleotide sequence