Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1060 and SMa1062 overlap by 4 nucleotides SMa1062 and SMa1063 overlap by 65 nucleotides SMa1063 and SMa1065 are separated by 51 nucleotides
SMa1060: SMa1060 - hypothetical protein, at 579,986 to 581,353
SMa1060
SMa1062: SMa1062 - hypothetical protein, at 581,350 to 582,180
SMa1062
SMa1063: SMa1063 - hypothetical protein, at 582,116 to 582,367
SMa1063
SMa1065: SMa1065 - hypothetical protein, at 582,419 to 583,207
SMa1065
Position (kb) 582
583 Strain fitness (log2 ratio) -2
-1
0
1
2 at 581.175 kb on + strand, within SMa1060 at 581.176 kb on - strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.209 kb on - strand, within SMa1060 at 581.220 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.249 kb on - strand at 581.251 kb on - strand at 581.251 kb on - strand at 581.356 kb on + strand at 581.356 kb on + strand at 581.414 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.560 kb on - strand, within SMa1062 at 581.586 kb on - strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.640 kb on - strand, within SMa1062 at 581.681 kb on + strand, within SMa1062 at 581.827 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 582.005 kb on + strand, within SMa1062 at 582.024 kb on - strand, within SMa1062 at 582.039 kb on - strand, within SMa1062 at 582.140 kb on + strand at 582.200 kb on - strand, within SMa1063 at 582.280 kb on + strand, within SMa1063 at 582.281 kb on - strand, within SMa1063 at 582.393 kb on - strand at 582.420 kb on + strand at 582.420 kb on + strand at 582.490 kb on - strand at 582.618 kb on + strand, within SMa1065 at 582.618 kb on + strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 583.175 kb on + strand at 583.175 kb on + strand at 583.193 kb on + strand at 583.194 kb on - strand at 583.194 kb on - strand at 583.227 kb on + strand at 583.227 kb on + strand at 583.249 kb on + strand at 583.305 kb on + strand at 583.305 kb on + strand at 583.305 kb on + strand at 583.306 kb on - strand at 583.346 kb on + strand at 583.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 581,175 + SMa1060 0.87 +0.6 581,176 - SMa1060 0.87 -0.1 581,208 + SMa1060 0.89 -0.2 581,208 + SMa1060 0.89 +0.8 581,209 - SMa1060 0.89 -0.3 581,220 + +0.5 581,244 + +1.5 581,244 + +0.6 581,244 + +1.4 581,244 + +0.5 581,249 - +0.6 581,251 - -0.5 581,251 - -0.5 581,356 + +0.2 581,356 + +0.1 581,414 + +0.0 581,429 + +1.1 581,429 + +0.9 581,429 + +0.6 581,560 - SMa1062 0.25 +0.2 581,586 - SMa1062 0.28 -1.0 581,639 + SMa1062 0.35 +0.5 581,639 + SMa1062 0.35 +0.4 581,639 + SMa1062 0.35 +0.2 581,640 - SMa1062 0.35 +2.0 581,681 + SMa1062 0.40 +0.8 581,827 - SMa1062 0.57 -1.2 581,984 - SMa1062 0.76 +0.3 581,984 - SMa1062 0.76 -0.8 582,005 + SMa1062 0.79 -0.1 582,024 - SMa1062 0.81 -1.3 582,039 - SMa1062 0.83 -0.2 582,140 + -0.0 582,200 - SMa1063 0.33 +2.3 582,280 + SMa1063 0.65 -2.1 582,281 - SMa1063 0.65 +0.1 582,393 - +2.2 582,420 + -0.3 582,420 + +0.1 582,490 - +0.8 582,618 + SMa1065 0.25 -2.0 582,618 + SMa1065 0.25 -0.3 582,619 - SMa1065 0.25 +0.3 582,619 - SMa1065 0.25 -0.1 582,900 + SMa1065 0.61 +1.2 582,900 + SMa1065 0.61 -0.7 582,900 + SMa1065 0.61 -1.3 582,900 + SMa1065 0.61 +0.0 582,901 - SMa1065 0.61 +0.3 582,901 - SMa1065 0.61 -0.3 582,901 - SMa1065 0.61 +1.4 582,901 - SMa1065 0.61 -1.0 582,901 - SMa1065 0.61 +0.9 582,901 - SMa1065 0.61 -1.7 583,175 + -0.2 583,175 + +0.6 583,193 + +0.9 583,194 - +0.4 583,194 - -1.3 583,227 + +0.5 583,227 + -0.0 583,249 + +0.9 583,305 + +1.0 583,305 + +0.6 583,305 + -1.1 583,306 - +0.3 583,346 + -0.9 583,347 - +0.4
Or see this region's nucleotide sequence