Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0872 and SMa0873 overlap by 1 nucleotides SMa0873 and SMa0874 are separated by 87 nucleotides SMa0874 and SMa0875 are separated by 6 nucleotides
SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756
SMa0872
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
SMa0874: SMa0874 - NodN dehydratase, at 485,169 to 485,654
SMa0874
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 482.868 kb on - strand at 482.869 kb on + strand at 483.048 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.085 kb on - strand at 483.087 kb on - strand at 483.175 kb on - strand at 483.283 kb on + strand at 483.401 kb on - strand at 483.489 kb on + strand, within SMa0872 at 483.647 kb on + strand, within SMa0872 at 483.648 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.779 kb on + strand at 483.779 kb on + strand at 483.971 kb on - strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.140 kb on - strand, within SMa0873 at 484.181 kb on + strand, within SMa0873 at 484.265 kb on + strand, within SMa0873 at 484.266 kb on - strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.298 kb on - strand, within SMa0873 at 484.324 kb on + strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.386 kb on - strand, within SMa0873 at 484.387 kb on + strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.536 kb on + strand, within SMa0873 at 484.537 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.728 kb on + strand, within SMa0873 at 484.740 kb on - strand, within SMa0873 at 484.828 kb on + strand, within SMa0873 at 484.936 kb on + strand, within SMa0873 at 485.283 kb on + strand, within SMa0874 at 485.287 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.520 kb on + strand, within SMa0874 at 485.521 kb on - strand, within SMa0874 at 485.666 kb on + strand at 485.785 kb on - strand at 485.809 kb on + strand at 485.810 kb on - strand at 485.810 kb on - strand at 485.856 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 482,868 - +0.0 482,869 + -0.1 483,048 + -0.3 483,069 + +1.0 483,070 - -0.0 483,085 - +1.4 483,087 - +0.2 483,175 - -0.3 483,283 + +0.1 483,401 - +0.4 483,489 + SMa0872 0.20 -0.1 483,647 + SMa0872 0.67 +0.7 483,648 - SMa0872 0.67 -0.9 483,654 - SMa0872 0.69 -0.4 483,654 - SMa0872 0.69 -1.9 483,779 + -0.1 483,779 + -1.3 483,971 - SMa0873 0.16 -1.1 484,048 + SMa0873 0.22 +0.3 484,048 + SMa0873 0.22 +0.3 484,048 + SMa0873 0.22 +1.5 484,140 - SMa0873 0.29 +2.5 484,181 + SMa0873 0.32 -0.9 484,265 + SMa0873 0.38 +0.1 484,266 - SMa0873 0.38 +1.4 484,297 + SMa0873 0.41 +1.9 484,297 + SMa0873 0.41 +0.0 484,298 - SMa0873 0.41 -0.2 484,324 + SMa0873 0.43 +0.7 484,328 - SMa0873 0.43 +2.0 484,328 - SMa0873 0.43 -0.5 484,386 - SMa0873 0.48 -0.8 484,387 + SMa0873 0.48 +0.1 484,388 - SMa0873 0.48 -0.1 484,388 - SMa0873 0.48 +0.9 484,491 - SMa0873 0.55 -0.8 484,491 - SMa0873 0.55 -0.5 484,491 - SMa0873 0.55 -0.1 484,536 + SMa0873 0.59 -1.7 484,537 - SMa0873 0.59 +0.4 484,565 - SMa0873 0.61 -0.6 484,565 - SMa0873 0.61 +0.5 484,728 + SMa0873 0.73 +1.3 484,740 - SMa0873 0.74 -0.2 484,828 + SMa0873 0.81 -0.2 484,936 + SMa0873 0.89 +0.4 485,283 + SMa0874 0.23 +1.4 485,287 - SMa0874 0.24 -1.1 485,302 - SMa0874 0.27 +0.5 485,302 - SMa0874 0.27 -0.6 485,520 + SMa0874 0.72 +3.8 485,521 - SMa0874 0.72 -0.6 485,666 + +0.9 485,785 - +0.4 485,809 + -1.5 485,810 - +0.0 485,810 - +0.5 485,856 + +0.3
Or see this region's nucleotide sequence