Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0870 and SMa0872 are separated by 687 nucleotides SMa0872 and SMa0873 overlap by 1 nucleotides
SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736
SMa0870
SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756
SMa0872
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.687 kb on + strand at 482.735 kb on - strand at 482.754 kb on - strand at 482.868 kb on - strand at 482.869 kb on + strand at 483.048 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.085 kb on - strand at 483.087 kb on - strand at 483.175 kb on - strand at 483.283 kb on + strand at 483.401 kb on - strand at 483.489 kb on + strand, within SMa0872 at 483.647 kb on + strand, within SMa0872 at 483.648 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.779 kb on + strand at 483.779 kb on + strand at 483.971 kb on - strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.048 kb on + strand, within SMa0873 at 484.140 kb on - strand, within SMa0873 at 484.181 kb on + strand, within SMa0873 at 484.265 kb on + strand, within SMa0873 at 484.266 kb on - strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.298 kb on - strand, within SMa0873 at 484.324 kb on + strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.386 kb on - strand, within SMa0873 at 484.387 kb on + strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.536 kb on + strand, within SMa0873 at 484.537 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.728 kb on + strand, within SMa0873 at 484.740 kb on - strand, within SMa0873
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 482,687 + -0.3 482,735 - +1.0 482,754 - +2.0 482,868 - +0.0 482,869 + -0.1 483,048 + -0.3 483,069 + +1.0 483,070 - -0.0 483,085 - +1.4 483,087 - +0.2 483,175 - -0.3 483,283 + +0.1 483,401 - +0.4 483,489 + SMa0872 0.20 -0.1 483,647 + SMa0872 0.67 +0.7 483,648 - SMa0872 0.67 -0.9 483,654 - SMa0872 0.69 -0.4 483,654 - SMa0872 0.69 -1.9 483,779 + -0.1 483,779 + -1.3 483,971 - SMa0873 0.16 -1.1 484,048 + SMa0873 0.22 +0.3 484,048 + SMa0873 0.22 +0.3 484,048 + SMa0873 0.22 +1.5 484,140 - SMa0873 0.29 +2.5 484,181 + SMa0873 0.32 -0.9 484,265 + SMa0873 0.38 +0.1 484,266 - SMa0873 0.38 +1.4 484,297 + SMa0873 0.41 +1.9 484,297 + SMa0873 0.41 +0.0 484,298 - SMa0873 0.41 -0.2 484,324 + SMa0873 0.43 +0.7 484,328 - SMa0873 0.43 +2.0 484,328 - SMa0873 0.43 -0.5 484,386 - SMa0873 0.48 -0.8 484,387 + SMa0873 0.48 +0.1 484,388 - SMa0873 0.48 -0.1 484,388 - SMa0873 0.48 +0.9 484,491 - SMa0873 0.55 -0.8 484,491 - SMa0873 0.55 -0.5 484,491 - SMa0873 0.55 -0.1 484,536 + SMa0873 0.59 -1.7 484,537 - SMa0873 0.59 +0.4 484,565 - SMa0873 0.61 -0.6 484,565 - SMa0873 0.61 +0.5 484,728 + SMa0873 0.73 +1.3 484,740 - SMa0873 0.74 -0.2
Or see this region's nucleotide sequence