Strain Fitness in Sinorhizobium meliloti 1021 around SMa0498

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0495 and SMa0496 are separated by 193 nucleotidesSMa0496 and SMa0498 are separated by 77 nucleotidesSMa0498 and SMa0499 are separated by 102 nucleotidesSMa0499 and SMa0501 are separated by 42 nucleotides SMa0495: SMa0495 - ABC transporter substrate-binding protein, at 269,299 to 270,117 SMa0495 SMa0496: SMa0496 - hypothetical protein, at 270,311 to 270,979 SMa0496 SMa0498: SMa0498 - LysR family transcriptional regulator, at 271,057 to 271,956 SMa0498 SMa0499: SMa0499 - hypothetical protein, at 272,059 to 272,691 SMa0499 SMa0501: SMa0501 - ABC transporter permease, at 272,734 to 273,420 SMa0501 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 270.076 kb on + strandat 270.173 kb on + strandat 270.241 kb on - strandat 270.346 kb on - strandat 270.396 kb on + strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.453 kb on - strand, within SMa0496at 270.546 kb on - strand, within SMa0496at 270.636 kb on + strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.674 kb on - strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.761 kb on + strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.762 kb on - strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.884 kb on + strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.885 kb on - strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.888 kb on + strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.889 kb on - strand, within SMa0496at 270.921 kb on + strandat 270.923 kb on + strandat 270.923 kb on + strandat 270.924 kb on - strandat 270.924 kb on - strandat 270.930 kb on - strandat 270.970 kb on + strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 270.971 kb on - strandat 271.168 kb on + strand, within SMa0498at 271.168 kb on + strand, within SMa0498at 271.168 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.195 kb on + strand, within SMa0498at 271.196 kb on - strand, within SMa0498at 271.246 kb on + strand, within SMa0498at 271.246 kb on + strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.247 kb on - strand, within SMa0498at 271.396 kb on + strand, within SMa0498at 271.396 kb on + strand, within SMa0498at 271.525 kb on + strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.526 kb on - strand, within SMa0498at 271.527 kb on + strand, within SMa0498at 271.528 kb on - strand, within SMa0498at 271.752 kb on - strand, within SMa0498at 271.923 kb on - strandat 271.985 kb on + strandat 272.022 kb on - strandat 272.022 kb on - strandat 272.160 kb on - strand, within SMa0499at 272.160 kb on - strand, within SMa0499at 272.294 kb on - strand, within SMa0499at 272.314 kb on + strand, within SMa0499at 272.515 kb on - strand, within SMa0499at 272.569 kb on + strand, within SMa0499at 272.569 kb on + strand, within SMa0499at 272.569 kb on + strand, within SMa0499at 272.569 kb on + strand, within SMa0499at 272.569 kb on + strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.570 kb on - strand, within SMa0499at 272.689 kb on + strandat 272.690 kb on - strandat 272.740 kb on + strandat 272.740 kb on + strandat 272.740 kb on + strandat 272.740 kb on + strandat 272.741 kb on - strandat 272.742 kb on + strandat 272.742 kb on + strandat 272.742 kb on + strandat 272.742 kb on + strandat 272.743 kb on - strandat 272.743 kb on - strandat 272.743 kb on - strandat 272.743 kb on - strandat 272.743 kb on - strandat 272.743 kb on - strandat 272.770 kb on + strandat 272.771 kb on - strandat 272.912 kb on - strand, within SMa0501

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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270,076 + -1.1
270,173 + +0.3
270,241 - +0.4
270,346 - +0.2
270,396 + SMa0496 0.13 -0.7
270,453 - SMa0496 0.21 +0.2
270,453 - SMa0496 0.21 -0.9
270,546 - SMa0496 0.35 +0.4
270,636 + SMa0496 0.49 -0.5
270,674 - SMa0496 0.54 -0.1
270,674 - SMa0496 0.54 +0.2
270,761 + SMa0496 0.67 +0.3
270,761 + SMa0496 0.67 +3.3
270,761 + SMa0496 0.67 +0.5
270,762 - SMa0496 0.67 +1.1
270,762 - SMa0496 0.67 -0.6
270,884 + SMa0496 0.86 -0.7
270,884 + SMa0496 0.86 +0.6
270,885 - SMa0496 0.86 -0.8
270,885 - SMa0496 0.86 +1.4
270,888 + SMa0496 0.86 +0.2
270,888 + SMa0496 0.86 +0.0
270,888 + SMa0496 0.86 +0.3
270,888 + SMa0496 0.86 -0.6
270,888 + SMa0496 0.86 -0.5
270,888 + SMa0496 0.86 -0.1
270,888 + SMa0496 0.86 +0.1
270,889 - SMa0496 0.86 +1.1
270,889 - SMa0496 0.86 -0.8
270,889 - SMa0496 0.86 -0.5
270,889 - SMa0496 0.86 -0.4
270,921 + +1.1
270,923 + -0.3
270,923 + +1.1
270,924 - +0.1
270,924 - -0.3
270,930 - +1.7
270,970 + -1.1
270,971 - -0.0
270,971 - +0.2
270,971 - +0.3
270,971 - -0.5
270,971 - +0.3
271,168 + SMa0498 0.12 +0.4
271,168 + SMa0498 0.12 +0.8
271,168 + SMa0498 0.12 +2.1
271,195 + SMa0498 0.15 +0.5
271,195 + SMa0498 0.15 +0.1
271,195 + SMa0498 0.15 -0.2
271,196 - SMa0498 0.15 +0.8
271,246 + SMa0498 0.21 +1.4
271,246 + SMa0498 0.21 -1.8
271,247 - SMa0498 0.21 +0.4
271,247 - SMa0498 0.21 +2.6
271,247 - SMa0498 0.21 -0.6
271,247 - SMa0498 0.21 +0.5
271,396 + SMa0498 0.38 -0.5
271,396 + SMa0498 0.38 +0.7
271,525 + SMa0498 0.52 +0.6
271,526 - SMa0498 0.52 -0.3
271,526 - SMa0498 0.52 +0.2
271,526 - SMa0498 0.52 +1.8
271,527 + SMa0498 0.52 +0.6
271,528 - SMa0498 0.52 +0.6
271,752 - SMa0498 0.77 -0.1
271,923 - -1.3
271,985 + -1.0
272,022 - -0.5
272,022 - +0.0
272,160 - SMa0499 0.16 +0.0
272,160 - SMa0499 0.16 -0.2
272,294 - SMa0499 0.37 -1.2
272,314 + SMa0499 0.40 -0.5
272,515 - SMa0499 0.72 -0.9
272,569 + SMa0499 0.81 +0.4
272,569 + SMa0499 0.81 -0.4
272,569 + SMa0499 0.81 +1.3
272,569 + SMa0499 0.81 -2.1
272,569 + SMa0499 0.81 +0.6
272,570 - SMa0499 0.81 +0.2
272,570 - SMa0499 0.81 -1.7
272,570 - SMa0499 0.81 -1.5
272,570 - SMa0499 0.81 -0.1
272,570 - SMa0499 0.81 -0.3
272,570 - SMa0499 0.81 -0.0
272,689 + -0.4
272,690 - -0.5
272,740 + -1.5
272,740 + -0.5
272,740 + -1.3
272,740 + -0.3
272,741 - +0.1
272,742 + +0.4
272,742 + -1.5
272,742 + -1.9
272,742 + -0.5
272,743 - +0.6
272,743 - +0.3
272,743 - +1.8
272,743 - -0.1
272,743 - +0.4
272,743 - +0.6
272,770 + +1.7
272,771 - +0.4
272,912 - SMa0501 0.26 -1.1

Or see this region's nucleotide sequence