Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21577 and SM_b21578 are separated by 283 nucleotides SM_b21578 and SM_b21579 are separated by 59 nucleotides SM_b21579 and SM_b21580 are separated by 46 nucleotides
SM_b21577: SM_b21577 - hypothetical protein, at 1,116,175 to 1,116,675
_b21577
SM_b21578: SM_b21578 - copper-transporting P-type ATPase, at 1,116,959 to 1,119,442
_b21578
SM_b21579: SM_b21579 - MerR family transcriptional regulator, at 1,119,502 to 1,119,945
_b21579
SM_b21580: SM_b21580 - hypothetical protein, at 1,119,992 to 1,120,438
_b21580
Position (kb)
1116
1117
1118
1119
1120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1116.177 kb on - strand at 1116.295 kb on + strand, within SM_b21577 at 1116.372 kb on + strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.748 kb on + strand at 1116.748 kb on + strand at 1116.848 kb on + strand at 1116.915 kb on - strand at 1117.188 kb on - strand at 1117.304 kb on - strand, within SM_b21578 at 1117.391 kb on + strand, within SM_b21578 at 1117.392 kb on - strand, within SM_b21578 at 1117.592 kb on + strand, within SM_b21578 at 1117.593 kb on - strand, within SM_b21578 at 1117.593 kb on - strand, within SM_b21578 at 1117.597 kb on - strand, within SM_b21578 at 1117.730 kb on + strand, within SM_b21578 at 1117.730 kb on + strand, within SM_b21578 at 1117.787 kb on + strand, within SM_b21578 at 1117.787 kb on + strand, within SM_b21578 at 1117.788 kb on - strand, within SM_b21578 at 1117.791 kb on - strand, within SM_b21578 at 1118.034 kb on - strand, within SM_b21578 at 1118.131 kb on + strand, within SM_b21578 at 1118.131 kb on + strand, within SM_b21578 at 1118.131 kb on + strand, within SM_b21578 at 1118.132 kb on - strand, within SM_b21578 at 1118.350 kb on - strand, within SM_b21578 at 1118.840 kb on + strand, within SM_b21578 at 1119.291 kb on - strand at 1119.292 kb on + strand at 1119.292 kb on + strand at 1119.293 kb on - strand at 1119.559 kb on + strand, within SM_b21579 at 1119.559 kb on + strand, within SM_b21579 at 1119.559 kb on + strand, within SM_b21579 at 1119.560 kb on - strand, within SM_b21579 at 1119.577 kb on - strand, within SM_b21579 at 1119.607 kb on + strand, within SM_b21579 at 1119.637 kb on - strand, within SM_b21579 at 1119.785 kb on + strand, within SM_b21579 at 1119.944 kb on - strand at 1119.944 kb on - strand at 1119.984 kb on + strand at 1119.985 kb on - strand at 1119.985 kb on - strand at 1120.045 kb on - strand at 1120.120 kb on + strand, within SM_b21580 at 1120.291 kb on + strand, within SM_b21580 at 1120.292 kb on - strand, within SM_b21580 at 1120.421 kb on + strand at 1120.422 kb on - strand at 1120.422 kb on - strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.426 kb on - strand at 1120.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,116,177 - -3.4 1,116,295 + SM_b21577 0.24 +1.7 1,116,372 + SM_b21577 0.39 +0.0 1,116,373 - SM_b21577 0.40 -0.2 1,116,373 - SM_b21577 0.40 +0.9 1,116,516 - SM_b21577 0.68 +1.1 1,116,516 - SM_b21577 0.68 +0.4 1,116,516 - SM_b21577 0.68 +1.0 1,116,516 - SM_b21577 0.68 -1.4 1,116,748 + -0.7 1,116,748 + -0.2 1,116,848 + +2.7 1,116,915 - +0.1 1,117,188 - -0.1 1,117,304 - SM_b21578 0.14 +0.4 1,117,391 + SM_b21578 0.17 -0.4 1,117,392 - SM_b21578 0.17 +0.5 1,117,592 + SM_b21578 0.25 -0.7 1,117,593 - SM_b21578 0.26 +0.0 1,117,593 - SM_b21578 0.26 -0.6 1,117,597 - SM_b21578 0.26 +0.0 1,117,730 + SM_b21578 0.31 -1.1 1,117,730 + SM_b21578 0.31 -1.5 1,117,787 + SM_b21578 0.33 -0.5 1,117,787 + SM_b21578 0.33 -1.0 1,117,788 - SM_b21578 0.33 -0.1 1,117,791 - SM_b21578 0.33 +0.5 1,118,034 - SM_b21578 0.43 +0.4 1,118,131 + SM_b21578 0.47 +0.5 1,118,131 + SM_b21578 0.47 -0.4 1,118,131 + SM_b21578 0.47 +0.1 1,118,132 - SM_b21578 0.47 +2.1 1,118,350 - SM_b21578 0.56 +0.9 1,118,840 + SM_b21578 0.76 +1.1 1,119,291 - -1.0 1,119,292 + +0.0 1,119,292 + +0.4 1,119,293 - -1.2 1,119,559 + SM_b21579 0.13 -0.9 1,119,559 + SM_b21579 0.13 -0.2 1,119,559 + SM_b21579 0.13 -0.5 1,119,560 - SM_b21579 0.13 -0.7 1,119,577 - SM_b21579 0.17 +0.6 1,119,607 + SM_b21579 0.24 +1.6 1,119,637 - SM_b21579 0.30 -0.8 1,119,785 + SM_b21579 0.64 -0.6 1,119,944 - -1.1 1,119,944 - -0.8 1,119,984 + +0.5 1,119,985 - -0.9 1,119,985 - -1.3 1,120,045 - -0.9 1,120,120 + SM_b21580 0.29 +0.3 1,120,291 + SM_b21580 0.67 -0.4 1,120,292 - SM_b21580 0.67 -2.0 1,120,421 + +0.5 1,120,422 - +0.2 1,120,422 - +0.2 1,120,425 + +0.5 1,120,425 + +0.4 1,120,425 + -1.9 1,120,425 + +0.2 1,120,426 - -1.2 1,120,426 - +0.4
Or see this region's nucleotide sequence