Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21540

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21539 and SM_b21671 are separated by 6 nucleotidesSM_b21671 and SM_b21540 are separated by 222 nucleotidesSM_b21540 and SM_b21541 are separated by 64 nucleotides SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732 _b21539 SM_b21671: SM_b21671 - hypothetical protein, at 1,069,739 to 1,070,227 _b21671 SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472 _b21540 SM_b21541: SM_b21541 - iron ABC transporter ATP-binding protein, at 1,071,537 to 1,072,724 _b21541 Position (kb) 1070 1071 1072Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1069.542 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.560 kb on - strand, within SM_b21539at 1069.662 kb on - strandat 1069.750 kb on + strandat 1069.753 kb on + strandat 1069.753 kb on + strandat 1069.754 kb on - strandat 1069.754 kb on - strandat 1069.769 kb on + strandat 1069.769 kb on + strandat 1070.008 kb on - strand, within SM_b21671at 1070.023 kb on - strand, within SM_b21671at 1070.094 kb on + strand, within SM_b21671at 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.216 kb on + strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.217 kb on - strandat 1070.218 kb on + strandat 1070.218 kb on + strandat 1070.219 kb on - strandat 1070.219 kb on - strandat 1070.225 kb on + strandat 1070.234 kb on - strandat 1070.236 kb on + strandat 1070.446 kb on + strandat 1070.447 kb on - strandat 1070.447 kb on - strandat 1070.538 kb on - strandat 1070.538 kb on - strandat 1070.570 kb on + strand, within SM_b21540at 1070.571 kb on - strand, within SM_b21540at 1070.764 kb on - strand, within SM_b21540at 1070.764 kb on - strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.828 kb on + strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.829 kb on - strand, within SM_b21540at 1070.846 kb on + strand, within SM_b21540at 1070.851 kb on + strand, within SM_b21540at 1071.053 kb on + strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.054 kb on - strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.055 kb on + strand, within SM_b21540at 1071.056 kb on - strand, within SM_b21540at 1071.056 kb on - strand, within SM_b21540at 1071.115 kb on - strand, within SM_b21540at 1071.167 kb on - strand, within SM_b21540at 1071.293 kb on + strand, within SM_b21540at 1071.293 kb on + strand, within SM_b21540at 1071.293 kb on + strand, within SM_b21540at 1071.294 kb on - strand, within SM_b21540at 1071.294 kb on - strand, within SM_b21540at 1071.321 kb on - strand, within SM_b21540at 1071.542 kb on + strandat 1071.542 kb on + strandat 1071.543 kb on - strandat 1071.543 kb on - strandat 1071.543 kb on - strandat 1071.664 kb on + strand, within SM_b21541at 1071.664 kb on + strand, within SM_b21541at 1071.664 kb on + strand, within SM_b21541at 1071.665 kb on - strand, within SM_b21541at 1071.665 kb on - strand, within SM_b21541at 1071.665 kb on - strand, within SM_b21541at 1071.665 kb on - strand, within SM_b21541at 1071.760 kb on + strand, within SM_b21541at 1071.824 kb on + strand, within SM_b21541at 1071.855 kb on + strand, within SM_b21541at 1071.896 kb on + strand, within SM_b21541at 1071.896 kb on + strand, within SM_b21541at 1071.897 kb on - strand, within SM_b21541at 1072.270 kb on + strand, within SM_b21541at 1072.271 kb on - strand, within SM_b21541at 1072.271 kb on - strand, within SM_b21541at 1072.290 kb on + strand, within SM_b21541at 1072.290 kb on + strand, within SM_b21541at 1072.460 kb on + strand, within SM_b21541

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,069,542 - SM_b21539 0.87 +2.5
1,069,560 - SM_b21539 0.88 +1.2
1,069,560 - SM_b21539 0.88 -0.5
1,069,662 - -0.4
1,069,750 + -0.6
1,069,753 + -0.2
1,069,753 + +0.3
1,069,754 - +0.5
1,069,754 - +0.5
1,069,769 + -0.3
1,069,769 + -0.9
1,070,008 - SM_b21671 0.55 +0.1
1,070,023 - SM_b21671 0.58 -0.2
1,070,094 + SM_b21671 0.73 +1.3
1,070,216 + +0.1
1,070,216 + +1.1
1,070,216 + -1.3
1,070,216 + -0.1
1,070,217 - -0.7
1,070,217 - -0.5
1,070,217 - -0.0
1,070,217 - +1.7
1,070,217 - +2.1
1,070,217 - -1.3
1,070,218 + -2.3
1,070,218 + +0.8
1,070,219 - +1.7
1,070,219 - -0.5
1,070,225 + -0.2
1,070,234 - -1.6
1,070,236 + +0.6
1,070,446 + -1.6
1,070,447 - +0.7
1,070,447 - +1.1
1,070,538 - -0.3
1,070,538 - -0.0
1,070,570 + SM_b21540 0.12 +0.4
1,070,571 - SM_b21540 0.12 -0.2
1,070,764 - SM_b21540 0.31 -0.5
1,070,764 - SM_b21540 0.31 +0.8
1,070,828 + SM_b21540 0.37 +1.7
1,070,828 + SM_b21540 0.37 -0.2
1,070,828 + SM_b21540 0.37 +2.2
1,070,828 + SM_b21540 0.37 -0.2
1,070,829 - SM_b21540 0.37 -0.5
1,070,829 - SM_b21540 0.37 -0.1
1,070,829 - SM_b21540 0.37 +0.3
1,070,829 - SM_b21540 0.37 -0.7
1,070,829 - SM_b21540 0.37 +0.8
1,070,829 - SM_b21540 0.37 +0.5
1,070,846 + SM_b21540 0.39 +0.3
1,070,851 + SM_b21540 0.39 +1.0
1,071,053 + SM_b21540 0.59 +1.4
1,071,054 - SM_b21540 0.59 +0.7
1,071,054 - SM_b21540 0.59 -0.1
1,071,054 - SM_b21540 0.59 +1.1
1,071,055 + SM_b21540 0.59 +0.1
1,071,055 + SM_b21540 0.59 +0.2
1,071,055 + SM_b21540 0.59 -1.8
1,071,055 + SM_b21540 0.59 +0.4
1,071,055 + SM_b21540 0.59 +1.5
1,071,056 - SM_b21540 0.59 +0.4
1,071,056 - SM_b21540 0.59 -0.6
1,071,115 - SM_b21540 0.65 +0.8
1,071,167 - SM_b21540 0.70 -1.1
1,071,293 + SM_b21540 0.82 +0.2
1,071,293 + SM_b21540 0.82 +5.7
1,071,293 + SM_b21540 0.82 -0.5
1,071,294 - SM_b21540 0.83 +0.7
1,071,294 - SM_b21540 0.83 +0.1
1,071,321 - SM_b21540 0.85 -0.7
1,071,542 + -0.8
1,071,542 + +0.3
1,071,543 - -1.5
1,071,543 - +1.0
1,071,543 - +1.6
1,071,664 + SM_b21541 0.11 +0.9
1,071,664 + SM_b21541 0.11 -1.5
1,071,664 + SM_b21541 0.11 +0.2
1,071,665 - SM_b21541 0.11 -0.3
1,071,665 - SM_b21541 0.11 +0.3
1,071,665 - SM_b21541 0.11 +0.4
1,071,665 - SM_b21541 0.11 -0.4
1,071,760 + SM_b21541 0.19 +0.5
1,071,824 + SM_b21541 0.24 -1.5
1,071,855 + SM_b21541 0.27 -1.5
1,071,896 + SM_b21541 0.30 +0.5
1,071,896 + SM_b21541 0.30 -0.2
1,071,897 - SM_b21541 0.30 +0.3
1,072,270 + SM_b21541 0.62 -1.7
1,072,271 - SM_b21541 0.62 +0.6
1,072,271 - SM_b21541 0.62 -0.6
1,072,290 + SM_b21541 0.63 +0.1
1,072,290 + SM_b21541 0.63 +3.2
1,072,460 + SM_b21541 0.78 +0.5

Or see this region's nucleotide sequence