Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21399 and SM_b21683 are separated by 35 nucleotides SM_b21683 and SM_b21400 are separated by 85 nucleotides SM_b21400 and SM_b21401 are separated by 48 nucleotides SM_b21401 and SM_b21402 are separated by 548 nucleotides
SM_b21399: SM_b21399 - hypothetical protein, at 1,330,868 to 1,331,272
_b21399
SM_b21683: SM_b21683 - hypothetical protein, at 1,331,308 to 1,331,499
_b21683
SM_b21400: SM_b21400 - hypothetical protein, at 1,331,585 to 1,331,821
_b21400
SM_b21401: SM_b21401 - hypothetical protein, at 1,331,870 to 1,332,220
_b21401
SM_b21402: SM_b21402 - hypothetical protein, at 1,332,769 to 1,333,932
_b21402
Position (kb)
1331
1332 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1330.656 kb on - strand at 1330.664 kb on + strand at 1330.664 kb on + strand at 1330.664 kb on + strand at 1330.827 kb on - strand at 1330.837 kb on - strand at 1330.837 kb on - strand at 1330.838 kb on + strand at 1330.851 kb on + strand at 1330.851 kb on + strand at 1330.852 kb on - strand at 1330.852 kb on - strand at 1330.852 kb on - strand at 1330.937 kb on + strand, within SM_b21399 at 1331.002 kb on + strand, within SM_b21399 at 1331.002 kb on + strand, within SM_b21399 at 1331.002 kb on + strand, within SM_b21399 at 1331.002 kb on + strand, within SM_b21399 at 1331.003 kb on - strand, within SM_b21399 at 1331.003 kb on - strand, within SM_b21399 at 1331.003 kb on - strand, within SM_b21399 at 1331.083 kb on - strand, within SM_b21399 at 1331.083 kb on - strand, within SM_b21399 at 1331.164 kb on - strand, within SM_b21399 at 1331.167 kb on + strand, within SM_b21399 at 1331.302 kb on + strand at 1331.302 kb on + strand at 1331.309 kb on + strand at 1331.324 kb on + strand at 1331.324 kb on + strand at 1331.324 kb on + strand at 1331.325 kb on - strand at 1331.336 kb on + strand, within SM_b21683 at 1331.337 kb on + strand, within SM_b21683 at 1331.337 kb on + strand, within SM_b21683 at 1331.338 kb on - strand, within SM_b21683 at 1331.338 kb on - strand, within SM_b21683 at 1331.338 kb on - strand, within SM_b21683 at 1331.411 kb on + strand, within SM_b21683 at 1331.411 kb on + strand, within SM_b21683 at 1331.511 kb on - strand at 1331.594 kb on - strand at 1331.685 kb on + strand, within SM_b21400 at 1331.686 kb on - strand, within SM_b21400 at 1331.686 kb on - strand, within SM_b21400 at 1331.828 kb on + strand at 1331.828 kb on + strand at 1331.828 kb on + strand at 1331.829 kb on - strand at 1331.829 kb on - strand at 1331.881 kb on + strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1332.000 kb on + strand, within SM_b21401 at 1332.000 kb on + strand, within SM_b21401 at 1332.001 kb on - strand, within SM_b21401 at 1332.005 kb on + strand, within SM_b21401 at 1332.006 kb on - strand, within SM_b21401 at 1332.041 kb on - strand, within SM_b21401 at 1332.172 kb on + strand, within SM_b21401 at 1332.172 kb on + strand, within SM_b21401 at 1332.217 kb on - strand at 1332.217 kb on - strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.283 kb on + strand at 1332.284 kb on - strand at 1332.352 kb on + strand at 1332.353 kb on - strand at 1332.455 kb on - strand at 1332.501 kb on + strand at 1332.502 kb on - strand at 1332.507 kb on + strand at 1332.549 kb on - strand at 1332.663 kb on + strand at 1332.664 kb on - strand at 1332.742 kb on - strand at 1332.757 kb on + strand at 1332.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,330,656 - +1.6 1,330,664 + +0.1 1,330,664 + +0.6 1,330,664 + +0.1 1,330,827 - +0.2 1,330,837 - -0.0 1,330,837 - +0.2 1,330,838 + +0.1 1,330,851 + -0.2 1,330,851 + +1.4 1,330,852 - -1.0 1,330,852 - -0.1 1,330,852 - +0.1 1,330,937 + SM_b21399 0.17 +0.6 1,331,002 + SM_b21399 0.33 +0.5 1,331,002 + SM_b21399 0.33 -2.3 1,331,002 + SM_b21399 0.33 +0.1 1,331,002 + SM_b21399 0.33 -0.6 1,331,003 - SM_b21399 0.33 +0.1 1,331,003 - SM_b21399 0.33 -2.0 1,331,003 - SM_b21399 0.33 -0.3 1,331,083 - SM_b21399 0.53 +0.3 1,331,083 - SM_b21399 0.53 +0.8 1,331,164 - SM_b21399 0.73 +1.5 1,331,167 + SM_b21399 0.74 +2.0 1,331,302 + +0.5 1,331,302 + -0.4 1,331,309 + -0.1 1,331,324 + +0.5 1,331,324 + -0.5 1,331,324 + -0.3 1,331,325 - +0.6 1,331,336 + SM_b21683 0.15 -1.7 1,331,337 + SM_b21683 0.15 -0.3 1,331,337 + SM_b21683 0.15 -0.1 1,331,338 - SM_b21683 0.16 -0.3 1,331,338 - SM_b21683 0.16 +0.3 1,331,338 - SM_b21683 0.16 -0.6 1,331,411 + SM_b21683 0.54 +0.3 1,331,411 + SM_b21683 0.54 -0.0 1,331,511 - +0.6 1,331,594 - +1.0 1,331,685 + SM_b21400 0.42 +0.6 1,331,686 - SM_b21400 0.43 +0.6 1,331,686 - SM_b21400 0.43 +1.9 1,331,828 + +2.4 1,331,828 + -0.4 1,331,828 + -0.5 1,331,829 - -0.5 1,331,829 - +0.1 1,331,881 + +0.4 1,331,882 - +0.1 1,331,882 - -0.2 1,331,882 - -0.3 1,331,882 - +0.4 1,331,882 - +0.4 1,331,882 - -0.7 1,332,000 + SM_b21401 0.37 -0.3 1,332,000 + SM_b21401 0.37 -2.7 1,332,001 - SM_b21401 0.37 +1.2 1,332,005 + SM_b21401 0.38 -1.1 1,332,006 - SM_b21401 0.39 +0.4 1,332,041 - SM_b21401 0.49 +0.3 1,332,172 + SM_b21401 0.86 +1.8 1,332,172 + SM_b21401 0.86 +0.8 1,332,217 - -0.7 1,332,217 - -0.4 1,332,221 + +0.5 1,332,221 + -0.3 1,332,221 + -1.0 1,332,221 + -0.2 1,332,221 + -0.5 1,332,221 + +2.4 1,332,222 - +0.1 1,332,222 - -1.4 1,332,222 - +0.4 1,332,222 - +0.0 1,332,222 - -0.8 1,332,222 - +0.4 1,332,283 + +1.7 1,332,284 - +2.1 1,332,352 + -0.1 1,332,353 - +0.2 1,332,455 - -0.6 1,332,501 + +0.5 1,332,502 - -0.4 1,332,507 + +1.1 1,332,549 - -0.9 1,332,663 + -2.0 1,332,664 - -0.3 1,332,742 - +0.7 1,332,757 + -0.9 1,332,786 + -0.4
Or see this region's nucleotide sequence