Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21239

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21237 and SM_b21238 are separated by 40 nucleotidesSM_b21238 and SM_b21239 overlap by 20 nucleotidesSM_b21239 and SM_b21240 are separated by 154 nucleotides SM_b21237: SM_b21237 - sulfotransferase domain-containing protein, at 803,187 to 804,110 _b21237 SM_b21238: SM_b21238 - hypothetical protein, at 804,151 to 804,381 _b21238 SM_b21239: SM_b21239 - pectate lysase, at 804,362 to 805,600 _b21239 SM_b21240: SM_b21240 - MPA1 family protein, at 805,755 to 807,743 _b21240 Position (kb) 804 805 806Strain fitness (log2 ratio) -2 -1 0 1 2 3at 803.433 kb on + strand, within SM_b21237at 803.433 kb on + strand, within SM_b21237at 803.433 kb on + strand, within SM_b21237at 803.434 kb on - strand, within SM_b21237at 803.434 kb on - strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.520 kb on + strand, within SM_b21237at 803.524 kb on + strand, within SM_b21237at 803.525 kb on - strand, within SM_b21237at 803.532 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.681 kb on - strand, within SM_b21237at 803.704 kb on - strandat 803.802 kb on + strand, within SM_b21237at 803.802 kb on + strand, within SM_b21237at 803.802 kb on + strand, within SM_b21237at 803.847 kb on + strand, within SM_b21237at 803.879 kb on + strand, within SM_b21237at 803.879 kb on + strand, within SM_b21237at 803.880 kb on - strand, within SM_b21237at 803.927 kb on + strandat 803.927 kb on + strand, within SM_b21237at 803.928 kb on - strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.971 kb on + strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 803.972 kb on - strand, within SM_b21237at 804.102 kb on + strandat 804.103 kb on - strandat 804.103 kb on - strandat 804.103 kb on - strandat 804.123 kb on + strandat 804.123 kb on + strandat 804.158 kb on + strandat 804.159 kb on - strandat 804.163 kb on + strandat 804.164 kb on - strandat 804.216 kb on - strand, within SM_b21238at 804.389 kb on + strandat 804.389 kb on + strandat 804.389 kb on + strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.390 kb on - strandat 804.464 kb on - strandat 804.698 kb on + strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.734 kb on - strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.014 kb on + strand, within SM_b21239at 805.048 kb on + strand, within SM_b21239at 805.049 kb on - strand, within SM_b21239at 805.064 kb on + strand, within SM_b21239at 805.065 kb on - strand, within SM_b21239at 805.142 kb on + strand, within SM_b21239at 805.143 kb on - strand, within SM_b21239at 805.143 kb on - strand, within SM_b21239at 805.157 kb on + strandat 805.158 kb on - strand, within SM_b21239at 805.158 kb on - strand, within SM_b21239at 805.286 kb on + strand, within SM_b21239at 805.287 kb on - strand, within SM_b21239at 805.465 kb on + strand, within SM_b21239at 805.466 kb on - strand, within SM_b21239at 805.466 kb on - strand, within SM_b21239at 805.598 kb on + strandat 805.599 kb on - strandat 805.599 kb on - strandat 805.599 kb on - strandat 805.746 kb on + strandat 805.746 kb on + strandat 805.747 kb on - strandat 805.747 kb on - strandat 805.757 kb on - strandat 806.040 kb on + strand, within SM_b21240at 806.040 kb on + strand, within SM_b21240at 806.041 kb on - strand, within SM_b21240at 806.042 kb on + strand, within SM_b21240at 806.042 kb on + strand, within SM_b21240at 806.287 kb on + strand, within SM_b21240at 806.287 kb on + strand, within SM_b21240at 806.288 kb on - strand, within SM_b21240at 806.501 kb on + strand, within SM_b21240at 806.502 kb on - strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.504 kb on - strand, within SM_b21240at 806.504 kb on - strand, within SM_b21240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
remove
803,433 + SM_b21237 0.27 -0.7
803,433 + SM_b21237 0.27 +0.5
803,433 + SM_b21237 0.27 +1.3
803,434 - SM_b21237 0.27 -0.3
803,434 - SM_b21237 0.27 -1.3
803,520 + SM_b21237 0.36 -0.3
803,520 + SM_b21237 0.36 -0.3
803,520 + SM_b21237 0.36 +0.1
803,524 + SM_b21237 0.36 +1.3
803,525 - SM_b21237 0.37 -0.1
803,532 - SM_b21237 0.37 +1.3
803,681 - SM_b21237 0.53 -1.3
803,681 - SM_b21237 0.53 +0.6
803,681 - SM_b21237 0.53 +0.7
803,704 - -0.9
803,802 + SM_b21237 0.67 +0.2
803,802 + SM_b21237 0.67 +2.6
803,802 + SM_b21237 0.67 -0.3
803,847 + SM_b21237 0.71 -0.1
803,879 + SM_b21237 0.75 +0.1
803,879 + SM_b21237 0.75 -0.2
803,880 - SM_b21237 0.75 -0.4
803,927 + +1.1
803,927 + SM_b21237 0.80 +2.1
803,928 - SM_b21237 0.80 +0.3
803,971 + SM_b21237 0.85 -0.3
803,971 + SM_b21237 0.85 +0.3
803,971 + SM_b21237 0.85 +0.0
803,972 - SM_b21237 0.85 +0.3
803,972 - SM_b21237 0.85 +0.0
803,972 - SM_b21237 0.85 +0.0
803,972 - SM_b21237 0.85 -0.1
804,102 + +0.8
804,103 - +0.3
804,103 - +0.5
804,103 - +1.1
804,123 + -0.9
804,123 + -0.3
804,158 + -0.4
804,159 - -0.1
804,163 + -0.7
804,164 - +2.3
804,216 - SM_b21238 0.28 +1.6
804,389 + +0.1
804,389 + -0.5
804,389 + +1.1
804,390 - -0.1
804,390 - +1.2
804,390 - +1.2
804,390 - +0.1
804,390 - -1.6
804,464 - +1.1
804,698 + SM_b21239 0.27 -1.4
804,734 - SM_b21239 0.30 -0.9
804,734 - SM_b21239 0.30 +1.0
804,734 - SM_b21239 0.30 +0.3
804,808 + SM_b21239 0.36 +0.3
804,808 + SM_b21239 0.36 +0.5
804,808 + SM_b21239 0.36 -0.0
804,808 + SM_b21239 0.36 +1.1
805,007 + SM_b21239 0.52 +1.0
805,007 + SM_b21239 0.52 +3.1
805,007 + SM_b21239 0.52 -0.3
805,008 - SM_b21239 0.52 -2.1
805,008 - SM_b21239 0.52 +0.5
805,014 + SM_b21239 0.53 +1.1
805,048 + SM_b21239 0.55 +1.4
805,049 - SM_b21239 0.55 +0.5
805,064 + SM_b21239 0.57 -0.7
805,065 - SM_b21239 0.57 +1.2
805,142 + SM_b21239 0.63 -0.8
805,143 - SM_b21239 0.63 +0.7
805,143 - SM_b21239 0.63 -0.9
805,157 + -0.5
805,158 - SM_b21239 0.64 -0.3
805,158 - SM_b21239 0.64 -0.9
805,286 + SM_b21239 0.75 +0.3
805,287 - SM_b21239 0.75 +0.2
805,465 + SM_b21239 0.89 +0.3
805,466 - SM_b21239 0.89 -0.7
805,466 - SM_b21239 0.89 +1.4
805,598 + -1.7
805,599 - -0.4
805,599 - -0.5
805,599 - -1.6
805,746 + -0.3
805,746 + +1.1
805,747 - -1.2
805,747 - -0.5
805,757 - -0.9
806,040 + SM_b21240 0.14 -1.5
806,040 + SM_b21240 0.14 +0.5
806,041 - SM_b21240 0.14 +0.6
806,042 + SM_b21240 0.14 +0.7
806,042 + SM_b21240 0.14 -0.4
806,287 + SM_b21240 0.27 -0.3
806,287 + SM_b21240 0.27 +0.5
806,288 - SM_b21240 0.27 -1.3
806,501 + SM_b21240 0.38 +0.1
806,502 - SM_b21240 0.38 -0.3
806,503 + SM_b21240 0.38 +0.7
806,503 + SM_b21240 0.38 +0.8
806,503 + SM_b21240 0.38 -1.5
806,503 + SM_b21240 0.38 +1.4
806,503 + SM_b21240 0.38 +0.2
806,504 - SM_b21240 0.38 -0.6
806,504 - SM_b21240 0.38 +3.5

Or see this region's nucleotide sequence