Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21069 and SM_b21070 are separated by 380 nucleotides SM_b21070 and SM_b21071 are separated by 413 nucleotides
SM_b21069: SM_b21069 - hypothetical protein, at 703,975 to 705,393
_b21069
SM_b21070: SM_b21070 - MPA1 family auxiliary surface saccharide export protein, at 705,774 to 707,672
_b21070
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 704.797 kb on + strand, within SM_b21069 at 704.798 kb on - strand, within SM_b21069 at 704.804 kb on + strand, within SM_b21069 at 704.805 kb on - strand, within SM_b21069 at 704.842 kb on + strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.866 kb on + strand, within SM_b21069 at 704.866 kb on + strand, within SM_b21069 at 704.868 kb on + strand, within SM_b21069 at 704.868 kb on + strand, within SM_b21069 at 704.935 kb on + strand, within SM_b21069 at 704.935 kb on + strand, within SM_b21069 at 705.055 kb on + strand, within SM_b21069 at 705.055 kb on + strand, within SM_b21069 at 705.056 kb on - strand, within SM_b21069 at 705.056 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.232 kb on + strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.280 kb on + strand at 705.281 kb on - strand at 705.281 kb on - strand at 705.281 kb on - strand at 705.306 kb on + strand at 705.306 kb on + strand at 705.306 kb on + strand at 705.307 kb on - strand at 705.307 kb on - strand at 705.342 kb on - strand at 705.364 kb on + strand at 705.457 kb on - strand at 705.465 kb on + strand at 705.521 kb on - strand at 705.523 kb on - strand at 705.532 kb on - strand at 705.541 kb on + strand at 705.541 kb on + strand at 705.541 kb on + strand at 705.600 kb on - strand at 705.600 kb on - strand at 705.640 kb on + strand at 705.640 kb on + strand at 705.641 kb on - strand at 705.712 kb on - strand at 705.712 kb on - strand at 705.712 kb on - strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.724 kb on - strand at 705.724 kb on - strand at 705.724 kb on - strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.819 kb on + strand at 705.819 kb on + strand at 705.886 kb on + strand at 705.887 kb on - strand at 705.944 kb on + strand at 705.971 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.192 kb on - strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.330 kb on + strand, within SM_b21070 at 706.344 kb on - strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.386 kb on - strand, within SM_b21070 at 706.392 kb on - strand, within SM_b21070 at 706.392 kb on - strand, within SM_b21070 at 706.593 kb on + strand, within SM_b21070 at 706.716 kb on + strand, within SM_b21070 at 706.716 kb on + strand, within SM_b21070 at 706.717 kb on - strand, within SM_b21070 at 706.717 kb on - strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.729 kb on - strand, within SM_b21070 at 706.776 kb on + strand, within SM_b21070 at 706.777 kb on - strand, within SM_b21070 at 706.913 kb on + strand, within SM_b21070 at 706.913 kb on + strand, within SM_b21070 at 706.914 kb on - strand, within SM_b21070 at 707.029 kb on + strand, within SM_b21070 at 707.030 kb on - strand, within SM_b21070 at 707.030 kb on - strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.033 kb on - strand, within SM_b21070 at 707.072 kb on + strand, within SM_b21070 at 707.072 kb on + strand, within SM_b21070 at 707.073 kb on - strand, within SM_b21070 at 707.073 kb on - strand, within SM_b21070 at 707.087 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.188 kb on - strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.306 kb on - strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.408 kb on - strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.621 kb on + strand at 707.621 kb on + strand at 707.621 kb on + strand at 707.722 kb on + strand at 707.789 kb on + strand at 707.789 kb on + strand at 707.792 kb on + strand at 707.792 kb on + strand at 707.793 kb on - strand at 707.795 kb on + strand at 707.795 kb on + strand at 707.796 kb on - strand at 707.823 kb on + strand at 707.868 kb on + strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.873 kb on - strand at 708.055 kb on + strand at 708.055 kb on + strand at 708.056 kb on - strand at 708.196 kb on - strand, within SM_b21071 at 708.293 kb on + strand, within SM_b21071 at 708.296 kb on - strand, within SM_b21071 at 708.341 kb on + strand, within SM_b21071 at 708.342 kb on - strand, within SM_b21071 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 704,797 + SM_b21069 0.58 -0.1 704,798 - SM_b21069 0.58 -0.3 704,804 + SM_b21069 0.58 +1.2 704,805 - SM_b21069 0.58 +0.3 704,842 + SM_b21069 0.61 +0.1 704,843 - SM_b21069 0.61 -0.3 704,843 - SM_b21069 0.61 -0.3 704,843 - SM_b21069 0.61 -0.0 704,866 + SM_b21069 0.63 -1.4 704,866 + SM_b21069 0.63 -1.3 704,868 + SM_b21069 0.63 +1.2 704,868 + SM_b21069 0.63 +1.1 704,935 + SM_b21069 0.68 +1.3 704,935 + SM_b21069 0.68 +1.5 705,055 + SM_b21069 0.76 +0.1 705,055 + SM_b21069 0.76 +1.6 705,056 - SM_b21069 0.76 +1.3 705,056 - SM_b21069 0.76 -0.3 705,133 - SM_b21069 0.82 +2.6 705,133 - SM_b21069 0.82 +0.4 705,133 - SM_b21069 0.82 +1.4 705,133 - SM_b21069 0.82 -2.2 705,232 + SM_b21069 0.89 -1.2 705,233 - SM_b21069 0.89 -0.3 705,233 - SM_b21069 0.89 -0.2 705,233 - SM_b21069 0.89 +1.3 705,280 + +0.4 705,281 - -0.6 705,281 - -0.9 705,281 - +0.0 705,306 + -1.4 705,306 + +0.1 705,306 + -0.1 705,307 - -0.3 705,307 - -0.8 705,342 - -0.2 705,364 + +0.1 705,457 - -0.2 705,465 + +1.8 705,521 - +0.2 705,523 - +0.3 705,532 - +0.1 705,541 + -3.0 705,541 + +1.3 705,541 + +0.8 705,600 - -0.4 705,600 - +0.5 705,640 + +0.1 705,640 + +0.2 705,641 - +0.0 705,712 - -0.5 705,712 - +1.2 705,712 - -0.2 705,723 + -0.6 705,723 + -0.0 705,724 - +2.8 705,724 - +0.5 705,724 - -0.3 705,778 + +0.4 705,778 + +0.2 705,778 + +0.1 705,778 + +0.1 705,819 + +1.1 705,819 + +1.1 705,886 + +0.4 705,887 - -1.1 705,944 + +1.4 705,971 + SM_b21070 0.10 -0.4 706,031 + SM_b21070 0.14 -0.2 706,031 + SM_b21070 0.14 -3.0 706,031 + SM_b21070 0.14 +0.9 706,192 - SM_b21070 0.22 -0.6 706,303 + SM_b21070 0.28 -0.6 706,303 + SM_b21070 0.28 -1.8 706,303 + SM_b21070 0.28 +0.8 706,330 + SM_b21070 0.29 -0.8 706,344 - SM_b21070 0.30 -0.5 706,380 + SM_b21070 0.32 +0.1 706,380 + SM_b21070 0.32 -2.2 706,380 + SM_b21070 0.32 +0.4 706,380 + SM_b21070 0.32 -0.2 706,380 + SM_b21070 0.32 +0.4 706,381 - SM_b21070 0.32 -0.1 706,381 - SM_b21070 0.32 -0.7 706,381 - SM_b21070 0.32 +1.0 706,381 - SM_b21070 0.32 +0.4 706,381 - SM_b21070 0.32 +0.8 706,381 - SM_b21070 0.32 -0.1 706,381 - SM_b21070 0.32 -1.6 706,381 - SM_b21070 0.32 +0.5 706,381 - SM_b21070 0.32 +2.4 706,386 - SM_b21070 0.32 -0.6 706,392 - SM_b21070 0.33 +0.6 706,392 - SM_b21070 0.33 +0.2 706,593 + SM_b21070 0.43 -0.0 706,716 + SM_b21070 0.50 +0.1 706,716 + SM_b21070 0.50 -0.2 706,717 - SM_b21070 0.50 -0.1 706,717 - SM_b21070 0.50 +1.8 706,728 + SM_b21070 0.50 +0.0 706,728 + SM_b21070 0.50 -0.5 706,728 + SM_b21070 0.50 +0.7 706,728 + SM_b21070 0.50 +2.3 706,729 - SM_b21070 0.50 +0.2 706,776 + SM_b21070 0.53 +0.5 706,777 - SM_b21070 0.53 +0.8 706,913 + SM_b21070 0.60 +1.1 706,913 + SM_b21070 0.60 +0.5 706,914 - SM_b21070 0.60 -0.3 707,029 + SM_b21070 0.66 -0.7 707,030 - SM_b21070 0.66 +0.2 707,030 - SM_b21070 0.66 -1.1 707,032 + SM_b21070 0.66 +0.7 707,032 + SM_b21070 0.66 -0.5 707,032 + SM_b21070 0.66 -0.0 707,032 + SM_b21070 0.66 +0.9 707,033 - SM_b21070 0.66 +0.1 707,072 + SM_b21070 0.68 -0.7 707,072 + SM_b21070 0.68 +0.4 707,073 - SM_b21070 0.68 +1.9 707,073 - SM_b21070 0.68 +0.1 707,087 + SM_b21070 0.69 +0.6 707,187 + SM_b21070 0.74 -1.3 707,187 + SM_b21070 0.74 +0.7 707,187 + SM_b21070 0.74 -0.0 707,188 - SM_b21070 0.74 +1.5 707,305 + SM_b21070 0.81 -0.7 707,305 + SM_b21070 0.81 -1.5 707,306 - SM_b21070 0.81 +2.0 707,384 + SM_b21070 0.85 -0.1 707,384 + SM_b21070 0.85 +0.0 707,384 + SM_b21070 0.85 +0.3 707,408 - SM_b21070 0.86 -0.4 707,430 + SM_b21070 0.87 -0.5 707,430 + SM_b21070 0.87 +1.7 707,430 + SM_b21070 0.87 +2.3 707,431 - SM_b21070 0.87 +1.1 707,431 - SM_b21070 0.87 +0.4 707,431 - SM_b21070 0.87 +1.0 707,431 - SM_b21070 0.87 +1.0 707,621 + +0.7 707,621 + +2.9 707,621 + +1.2 707,722 + +0.6 707,789 + +0.3 707,789 + +0.5 707,792 + +0.6 707,792 + -0.2 707,793 - +0.3 707,795 + -0.5 707,795 + +0.6 707,796 - +0.2 707,823 + +0.7 707,868 + -0.1 707,869 - -1.1 707,869 - +0.7 707,869 - -1.0 707,873 - -0.1 708,055 + -0.3 708,055 + -2.0 708,056 - -1.2 708,196 - SM_b21071 0.17 -0.4 708,293 + SM_b21071 0.32 +0.0 708,296 - SM_b21071 0.32 +0.6 708,341 + SM_b21071 0.39 -3.5 708,342 - SM_b21071 0.39 -0.4 708,473 - SM_b21071 0.59 -0.2 708,597 + SM_b21071 0.78 +0.6 708,597 + SM_b21071 0.78 -0.1 708,597 + SM_b21071 0.78 +0.4 708,598 - SM_b21071 0.79 -0.2 708,598 - SM_b21071 0.79 -0.1 708,598 - SM_b21071 0.79 -2.3 708,598 - SM_b21071 0.79 +1.1 708,620 + SM_b21071 0.82 -0.3 708,621 - SM_b21071 0.82 +0.7 708,650 + SM_b21071 0.87 -0.6 708,651 - SM_b21071 0.87 +0.3 708,651 - SM_b21071 0.87 +0.5 708,651 - SM_b21071 0.87 -0.0 708,655 - SM_b21071 0.87 +0.5
Or see this region's nucleotide sequence