Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21016 and SM_b21017 are separated by 2 nucleotides SM_b21017 and SM_b21018 overlap by 4 nucleotides
SM_b21016: SM_b21016 - sugar ABC transporter substrate-binding protein, at 639,364 to 640,395
_b21016
SM_b21017: SM_b21017 - sugar ABC transporter permease, at 640,398 to 641,411
_b21017
SM_b21018: SM_b21018 - sugar ABC transporter permease, at 641,408 to 642,439
_b21018
Position (kb) 640
641
642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 639.446 kb on + strand at 639.452 kb on + strand at 639.452 kb on + strand at 639.453 kb on - strand at 639.460 kb on + strand at 639.461 kb on - strand at 639.461 kb on - strand at 639.624 kb on + strand, within SM_b21016 at 639.624 kb on + strand, within SM_b21016 at 639.625 kb on - strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.758 kb on + strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.759 kb on - strand, within SM_b21016 at 639.772 kb on - strand, within SM_b21016 at 639.803 kb on + strand, within SM_b21016 at 639.809 kb on + strand, within SM_b21016 at 639.810 kb on - strand, within SM_b21016 at 639.815 kb on + strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.011 kb on - strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.013 kb on + strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.014 kb on - strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.136 kb on + strand, within SM_b21016 at 640.137 kb on - strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.205 kb on + strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.206 kb on - strand, within SM_b21016 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.630 kb on + strand, within SM_b21017 at 640.631 kb on - strand, within SM_b21017 at 640.714 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.765 kb on + strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 640.766 kb on - strand, within SM_b21017 at 641.070 kb on + strand, within SM_b21017 at 641.071 kb on - strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.164 kb on + strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.165 kb on - strand, within SM_b21017 at 641.196 kb on - strand, within SM_b21017 at 641.241 kb on + strand, within SM_b21017 at 641.312 kb on + strand at 641.580 kb on + strand, within SM_b21018 at 641.626 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.690 kb on + strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.691 kb on - strand, within SM_b21018 at 641.831 kb on - strand, within SM_b21018 at 641.837 kb on + strand, within SM_b21018 at 641.880 kb on + strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.106 kb on - strand, within SM_b21018 at 642.254 kb on - strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.277 kb on + strand, within SM_b21018 at 642.278 kb on - strand, within SM_b21018 at 642.348 kb on + strand at 642.349 kb on - strand at 642.349 kb on - strand at 642.396 kb on - strand at 642.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 639,446 + -2.3 639,452 + +0.0 639,452 + -0.0 639,453 - +7.6 639,460 + -0.6 639,461 - -0.5 639,461 - +1.2 639,624 + SM_b21016 0.25 -1.6 639,624 + SM_b21016 0.25 -0.2 639,625 - SM_b21016 0.25 -0.9 639,758 + SM_b21016 0.38 -0.8 639,758 + SM_b21016 0.38 -0.9 639,759 - SM_b21016 0.38 +0.9 639,759 - SM_b21016 0.38 +1.5 639,772 - SM_b21016 0.40 +0.9 639,803 + SM_b21016 0.43 -0.2 639,809 + SM_b21016 0.43 +0.2 639,810 - SM_b21016 0.43 -0.4 639,815 + SM_b21016 0.44 -0.7 640,011 - SM_b21016 0.63 -0.5 640,011 - SM_b21016 0.63 -1.0 640,013 + SM_b21016 0.63 -0.5 640,013 + SM_b21016 0.63 -0.6 640,014 - SM_b21016 0.63 +0.8 640,014 - SM_b21016 0.63 +0.4 640,014 - SM_b21016 0.63 +0.1 640,136 + SM_b21016 0.75 -0.6 640,136 + SM_b21016 0.75 -0.7 640,137 - SM_b21016 0.75 -0.2 640,205 + SM_b21016 0.81 -4.0 640,205 + SM_b21016 0.81 -0.3 640,205 + SM_b21016 0.81 -1.0 640,206 - SM_b21016 0.82 -0.6 640,206 - SM_b21016 0.82 -0.7 640,206 - SM_b21016 0.82 -0.6 640,206 - SM_b21016 0.82 -2.5 640,630 + SM_b21017 0.23 -0.3 640,630 + SM_b21017 0.23 -0.1 640,630 + SM_b21017 0.23 -2.5 640,631 - SM_b21017 0.23 -0.3 640,714 + SM_b21017 0.31 -0.6 640,765 + SM_b21017 0.36 -0.7 640,765 + SM_b21017 0.36 -0.8 640,765 + SM_b21017 0.36 -0.0 640,766 - SM_b21017 0.36 +0.3 640,766 - SM_b21017 0.36 +0.4 641,070 + SM_b21017 0.66 +0.1 641,071 - SM_b21017 0.66 -0.9 641,164 + SM_b21017 0.76 +0.1 641,164 + SM_b21017 0.76 +1.6 641,165 - SM_b21017 0.76 +1.5 641,165 - SM_b21017 0.76 -0.8 641,196 - SM_b21017 0.79 -1.1 641,241 + SM_b21017 0.83 -2.3 641,312 + +0.5 641,580 + SM_b21018 0.17 -2.2 641,626 + SM_b21018 0.21 -0.1 641,690 + SM_b21018 0.27 +0.4 641,690 + SM_b21018 0.27 +0.1 641,690 + SM_b21018 0.27 -0.5 641,691 - SM_b21018 0.27 +0.2 641,691 - SM_b21018 0.27 -0.0 641,831 - SM_b21018 0.41 -0.1 641,837 + SM_b21018 0.42 +0.3 641,880 + SM_b21018 0.46 -1.1 642,106 - SM_b21018 0.68 +1.0 642,106 - SM_b21018 0.68 -0.1 642,254 - SM_b21018 0.82 -0.8 642,277 + SM_b21018 0.84 -0.5 642,277 + SM_b21018 0.84 -0.6 642,278 - SM_b21018 0.84 -0.1 642,348 + -0.0 642,349 - -1.2 642,349 - -0.2 642,396 - +0.7 642,396 - -0.3
Or see this region's nucleotide sequence