Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20852

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20851 and SM_b20852 overlap by 4 nucleotidesSM_b20852 and SM_b20853 are separated by 43 nucleotides SM_b20851: SM_b20851 - SorC family transcriptional regulator, at 1,254,564 to 1,255,544 _b20851 SM_b20852: SM_b20852 - sugar kinase, at 1,255,541 to 1,257,070 _b20852 SM_b20853: SM_b20853 - sugar-alcohol dehydrogenase, at 1,257,114 to 1,258,133 _b20853 Position (kb) 1255 1256 1257 1258Strain fitness (log2 ratio) -2 -1 0 1 2at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.050 kb on - strandat 1255.050 kb on - strand, within SM_b20851at 1255.054 kb on + strand, within SM_b20851at 1255.055 kb on - strand, within SM_b20851at 1255.096 kb on - strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.155 kb on - strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851at 1255.395 kb on - strand, within SM_b20851at 1255.456 kb on + strandat 1255.544 kb on + strandat 1255.544 kb on + strandat 1255.545 kb on - strandat 1255.636 kb on + strandat 1255.636 kb on + strandat 1255.636 kb on + strandat 1255.644 kb on + strandat 1255.645 kb on - strandat 1255.645 kb on - strandat 1255.652 kb on - strandat 1255.745 kb on - strand, within SM_b20852at 1255.745 kb on - strand, within SM_b20852at 1255.745 kb on - strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.804 kb on + strand, within SM_b20852at 1255.805 kb on - strand, within SM_b20852at 1255.805 kb on - strand, within SM_b20852at 1255.808 kb on + strand, within SM_b20852at 1255.809 kb on - strand, within SM_b20852at 1255.809 kb on - strand, within SM_b20852at 1255.954 kb on - strand, within SM_b20852at 1256.026 kb on + strand, within SM_b20852at 1256.027 kb on - strand, within SM_b20852at 1256.043 kb on + strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.044 kb on - strand, within SM_b20852at 1256.242 kb on + strand, within SM_b20852at 1256.245 kb on + strand, within SM_b20852at 1256.245 kb on + strand, within SM_b20852at 1256.246 kb on - strand, within SM_b20852at 1256.344 kb on + strand, within SM_b20852at 1256.345 kb on - strand, within SM_b20852at 1256.345 kb on - strand, within SM_b20852at 1256.354 kb on + strand, within SM_b20852at 1256.354 kb on + strand, within SM_b20852at 1256.355 kb on - strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.398 kb on + strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.399 kb on - strand, within SM_b20852at 1256.496 kb on + strand, within SM_b20852at 1256.497 kb on - strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.532 kb on + strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852at 1256.533 kb on - strand, within SM_b20852at 1256.574 kb on - strand, within SM_b20852at 1256.582 kb on + strand, within SM_b20852at 1256.820 kb on - strand, within SM_b20852at 1256.820 kb on - strand, within SM_b20852at 1256.971 kb on - strandat 1257.180 kb on + strandat 1257.181 kb on - strandat 1257.181 kb on - strandat 1257.375 kb on + strand, within SM_b20853at 1257.376 kb on - strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.510 kb on + strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.511 kb on - strand, within SM_b20853at 1257.660 kb on + strand, within SM_b20853at 1257.660 kb on + strand, within SM_b20853at 1257.663 kb on - strand, within SM_b20853at 1257.787 kb on + strand, within SM_b20853at 1257.814 kb on + strand, within SM_b20853at 1257.814 kb on + strand, within SM_b20853at 1257.814 kb on + strand, within SM_b20853at 1257.814 kb on + strand, within SM_b20853at 1257.815 kb on - strand, within SM_b20853at 1257.815 kb on - strand, within SM_b20853at 1257.815 kb on - strand, within SM_b20853at 1257.858 kb on + strand, within SM_b20853at 1257.858 kb on + strand, within SM_b20853at 1257.858 kb on + strand, within SM_b20853at 1257.859 kb on - strand, within SM_b20853at 1257.890 kb on + strand, within SM_b20853

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,255,049 + SM_b20851 0.49 +1.4
1,255,049 + SM_b20851 0.49 -0.2
1,255,049 + SM_b20851 0.49 +0.1
1,255,049 + SM_b20851 0.49 -1.0
1,255,050 - +0.4
1,255,050 - SM_b20851 0.50 +0.6
1,255,054 + SM_b20851 0.50 -0.4
1,255,055 - SM_b20851 0.50 +1.7
1,255,096 - SM_b20851 0.54 +0.3
1,255,154 + SM_b20851 0.60 -0.5
1,255,154 + SM_b20851 0.60 +0.3
1,255,155 - SM_b20851 0.60 -2.2
1,255,207 + SM_b20851 0.66 +0.9
1,255,207 + SM_b20851 0.66 +1.5
1,255,208 - SM_b20851 0.66 +0.6
1,255,208 - SM_b20851 0.66 -0.9
1,255,395 - SM_b20851 0.85 +0.3
1,255,456 + +0.0
1,255,544 + -2.0
1,255,544 + +0.3
1,255,545 - +0.3
1,255,636 + +1.0
1,255,636 + +0.6
1,255,636 + +0.4
1,255,644 + +0.8
1,255,645 - -0.2
1,255,645 - -0.3
1,255,652 - -0.2
1,255,745 - SM_b20852 0.13 +0.1
1,255,745 - SM_b20852 0.13 -0.2
1,255,745 - SM_b20852 0.13 +0.6
1,255,804 + SM_b20852 0.17 -0.0
1,255,804 + SM_b20852 0.17 +0.5
1,255,804 + SM_b20852 0.17 +0.5
1,255,804 + SM_b20852 0.17 -0.1
1,255,805 - SM_b20852 0.17 -0.5
1,255,805 - SM_b20852 0.17 +1.3
1,255,808 + SM_b20852 0.17 +1.1
1,255,809 - SM_b20852 0.18 +0.0
1,255,809 - SM_b20852 0.18 +0.0
1,255,954 - SM_b20852 0.27 +1.5
1,256,026 + SM_b20852 0.32 -0.4
1,256,027 - SM_b20852 0.32 +0.8
1,256,043 + SM_b20852 0.33 -0.1
1,256,044 - SM_b20852 0.33 -0.3
1,256,044 - SM_b20852 0.33 +0.2
1,256,044 - SM_b20852 0.33 +0.4
1,256,242 + SM_b20852 0.46 +0.0
1,256,245 + SM_b20852 0.46 +1.6
1,256,245 + SM_b20852 0.46 -0.1
1,256,246 - SM_b20852 0.46 +1.1
1,256,344 + SM_b20852 0.52 +0.9
1,256,345 - SM_b20852 0.53 +0.0
1,256,345 - SM_b20852 0.53 -0.4
1,256,354 + SM_b20852 0.53 +0.8
1,256,354 + SM_b20852 0.53 -0.6
1,256,355 - SM_b20852 0.53 +0.4
1,256,398 + SM_b20852 0.56 -0.3
1,256,398 + SM_b20852 0.56 +0.7
1,256,398 + SM_b20852 0.56 -0.5
1,256,399 - SM_b20852 0.56 +0.6
1,256,399 - SM_b20852 0.56 +0.2
1,256,399 - SM_b20852 0.56 -0.9
1,256,399 - SM_b20852 0.56 +1.1
1,256,496 + SM_b20852 0.62 -0.1
1,256,497 - SM_b20852 0.62 +1.2
1,256,532 + SM_b20852 0.65 +0.9
1,256,532 + SM_b20852 0.65 +0.5
1,256,532 + SM_b20852 0.65 -0.5
1,256,532 + SM_b20852 0.65 +0.2
1,256,533 - SM_b20852 0.65 -0.3
1,256,533 - SM_b20852 0.65 +0.8
1,256,533 - SM_b20852 0.65 +0.3
1,256,574 - SM_b20852 0.68 -0.2
1,256,582 + SM_b20852 0.68 +1.5
1,256,820 - SM_b20852 0.84 -1.6
1,256,820 - SM_b20852 0.84 +0.5
1,256,971 - -1.4
1,257,180 + +0.3
1,257,181 - +0.3
1,257,181 - -0.4
1,257,375 + SM_b20853 0.26 -2.2
1,257,376 - SM_b20853 0.26 -1.9
1,257,510 + SM_b20853 0.39 -0.3
1,257,510 + SM_b20853 0.39 -0.4
1,257,510 + SM_b20853 0.39 +0.5
1,257,510 + SM_b20853 0.39 -0.7
1,257,510 + SM_b20853 0.39 -0.2
1,257,510 + SM_b20853 0.39 -0.1
1,257,510 + SM_b20853 0.39 -0.4
1,257,510 + SM_b20853 0.39 -0.5
1,257,511 - SM_b20853 0.39 +0.1
1,257,511 - SM_b20853 0.39 +2.7
1,257,511 - SM_b20853 0.39 +2.6
1,257,511 - SM_b20853 0.39 +0.6
1,257,511 - SM_b20853 0.39 +0.6
1,257,511 - SM_b20853 0.39 -0.7
1,257,511 - SM_b20853 0.39 -2.1
1,257,660 + SM_b20853 0.54 +1.2
1,257,660 + SM_b20853 0.54 -0.3
1,257,663 - SM_b20853 0.54 -0.3
1,257,787 + SM_b20853 0.66 +0.4
1,257,814 + SM_b20853 0.69 +0.2
1,257,814 + SM_b20853 0.69 -0.3
1,257,814 + SM_b20853 0.69 +0.7
1,257,814 + SM_b20853 0.69 +0.7
1,257,815 - SM_b20853 0.69 +1.5
1,257,815 - SM_b20853 0.69 -2.4
1,257,815 - SM_b20853 0.69 +0.4
1,257,858 + SM_b20853 0.73 +0.0
1,257,858 + SM_b20853 0.73 -0.0
1,257,858 + SM_b20853 0.73 +0.5
1,257,859 - SM_b20853 0.73 -0.0
1,257,890 + SM_b20853 0.76 -0.5

Or see this region's nucleotide sequence