Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20835

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20834 and SM_b20835 are separated by 88 nucleotidesSM_b20835 and SM_b20836 overlap by 20 nucleotidesSM_b20836 and SM_b20837 are separated by 540 nucleotides SM_b20834: SM_b20834 - surface saccharide synthesis protein, at 625,738 to 627,036 _b20834 SM_b20835: SM_b20835 - hypothetical protein, at 627,125 to 628,120 _b20835 SM_b20836: SM_b20836 - heme-binding protein, at 628,101 to 628,430 _b20836 SM_b20837: SM_b20837 - hypothetical protein, at 628,971 to 629,195 _b20837 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2 3at 626.138 kb on + strand, within SM_b20834at 626.138 kb on + strand, within SM_b20834at 626.138 kb on + strand, within SM_b20834at 626.139 kb on - strand, within SM_b20834at 626.211 kb on + strand, within SM_b20834at 626.211 kb on + strand, within SM_b20834at 626.211 kb on + strand, within SM_b20834at 626.212 kb on - strand, within SM_b20834at 626.212 kb on - strand, within SM_b20834at 626.212 kb on - strand, within SM_b20834at 626.213 kb on + strand, within SM_b20834at 626.214 kb on - strand, within SM_b20834at 626.214 kb on - strand, within SM_b20834at 626.489 kb on + strand, within SM_b20834at 626.490 kb on - strand, within SM_b20834at 626.525 kb on + strand, within SM_b20834at 626.525 kb on + strand, within SM_b20834at 626.526 kb on - strand, within SM_b20834at 626.547 kb on + strand, within SM_b20834at 626.606 kb on + strand, within SM_b20834at 626.654 kb on + strand, within SM_b20834at 626.654 kb on + strand, within SM_b20834at 626.737 kb on + strand, within SM_b20834at 626.738 kb on - strand, within SM_b20834at 626.738 kb on - strand, within SM_b20834at 626.915 kb on + strandat 626.998 kb on - strandat 627.068 kb on + strandat 627.069 kb on - strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.072 kb on + strandat 627.073 kb on - strandat 627.073 kb on - strandat 627.073 kb on - strandat 627.109 kb on + strandat 627.110 kb on - strandat 627.226 kb on + strand, within SM_b20835at 627.226 kb on + strand, within SM_b20835at 627.262 kb on - strand, within SM_b20835at 627.277 kb on - strand, within SM_b20835at 627.405 kb on + strand, within SM_b20835at 627.405 kb on + strand, within SM_b20835at 627.405 kb on + strand, within SM_b20835at 627.405 kb on + strand, within SM_b20835at 627.405 kb on + strand, within SM_b20835at 627.406 kb on - strand, within SM_b20835at 627.406 kb on - strand, within SM_b20835at 627.406 kb on - strand, within SM_b20835at 627.436 kb on - strand, within SM_b20835at 627.448 kb on + strand, within SM_b20835at 627.449 kb on - strand, within SM_b20835at 627.501 kb on + strand, within SM_b20835at 627.501 kb on + strand, within SM_b20835at 627.501 kb on + strand, within SM_b20835at 627.501 kb on + strand, within SM_b20835at 627.502 kb on - strand, within SM_b20835at 627.569 kb on - strand, within SM_b20835at 627.627 kb on + strand, within SM_b20835at 627.628 kb on - strand, within SM_b20835at 627.666 kb on + strand, within SM_b20835at 627.667 kb on - strand, within SM_b20835at 627.679 kb on - strand, within SM_b20835at 627.753 kb on - strand, within SM_b20835at 627.777 kb on + strand, within SM_b20835at 627.777 kb on + strand, within SM_b20835at 627.778 kb on - strand, within SM_b20835at 627.778 kb on - strand, within SM_b20835at 627.829 kb on - strand, within SM_b20835at 627.885 kb on + strand, within SM_b20835at 627.886 kb on - strand, within SM_b20835at 627.886 kb on - strand, within SM_b20835at 627.886 kb on - strand, within SM_b20835at 628.107 kb on + strandat 628.130 kb on + strandat 628.131 kb on - strandat 628.232 kb on + strand, within SM_b20836at 628.233 kb on - strand, within SM_b20836at 628.321 kb on + strand, within SM_b20836at 628.321 kb on + strand, within SM_b20836at 628.321 kb on + strand, within SM_b20836at 628.359 kb on - strand, within SM_b20836at 628.405 kb on + strandat 628.476 kb on + strandat 628.476 kb on + strandat 628.477 kb on - strandat 628.477 kb on - strandat 628.481 kb on + strandat 628.481 kb on + strandat 628.481 kb on + strandat 628.482 kb on - strandat 628.505 kb on - strandat 628.644 kb on + strandat 628.645 kb on - strandat 628.645 kb on - strandat 628.697 kb on + strandat 628.697 kb on + strandat 628.697 kb on + strandat 628.697 kb on + strandat 628.697 kb on + strandat 628.698 kb on - strandat 628.698 kb on - strandat 628.698 kb on - strandat 628.854 kb on + strandat 628.855 kb on - strandat 628.972 kb on + strandat 628.972 kb on + strandat 628.972 kb on + strandat 628.973 kb on - strandat 628.973 kb on - strandat 628.973 kb on - strandat 628.974 kb on + strandat 629.059 kb on + strand, within SM_b20837at 629.059 kb on + strand, within SM_b20837

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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626,138 + SM_b20834 0.31 -0.4
626,138 + SM_b20834 0.31 +0.3
626,138 + SM_b20834 0.31 +0.0
626,139 - SM_b20834 0.31 -0.2
626,211 + SM_b20834 0.36 +0.8
626,211 + SM_b20834 0.36 +0.1
626,211 + SM_b20834 0.36 +1.3
626,212 - SM_b20834 0.36 +0.9
626,212 - SM_b20834 0.36 -0.6
626,212 - SM_b20834 0.36 +0.2
626,213 + SM_b20834 0.37 +0.0
626,214 - SM_b20834 0.37 -0.1
626,214 - SM_b20834 0.37 -0.8
626,489 + SM_b20834 0.58 +0.6
626,490 - SM_b20834 0.58 +0.3
626,525 + SM_b20834 0.61 +0.4
626,525 + SM_b20834 0.61 -1.8
626,526 - SM_b20834 0.61 -0.2
626,547 + SM_b20834 0.62 +0.5
626,606 + SM_b20834 0.67 +0.4
626,654 + SM_b20834 0.71 -0.8
626,654 + SM_b20834 0.71 +1.4
626,737 + SM_b20834 0.77 -0.4
626,738 - SM_b20834 0.77 +1.1
626,738 - SM_b20834 0.77 +0.4
626,915 + -0.3
626,998 - -0.8
627,068 + +0.1
627,069 - +3.2
627,072 + +0.2
627,072 + +0.6
627,072 + +0.4
627,072 + +1.1
627,072 + +0.6
627,072 + -0.9
627,072 + +0.4
627,073 - -1.3
627,073 - -0.8
627,073 - +0.1
627,109 + -0.6
627,110 - +0.1
627,226 + SM_b20835 0.10 +0.4
627,226 + SM_b20835 0.10 -0.0
627,262 - SM_b20835 0.14 -0.3
627,277 - SM_b20835 0.15 -0.6
627,405 + SM_b20835 0.28 +0.7
627,405 + SM_b20835 0.28 +2.0
627,405 + SM_b20835 0.28 -0.4
627,405 + SM_b20835 0.28 +0.3
627,405 + SM_b20835 0.28 +0.3
627,406 - SM_b20835 0.28 +0.6
627,406 - SM_b20835 0.28 -0.4
627,406 - SM_b20835 0.28 +1.1
627,436 - SM_b20835 0.31 -0.5
627,448 + SM_b20835 0.32 +0.4
627,449 - SM_b20835 0.33 -1.1
627,501 + SM_b20835 0.38 +0.5
627,501 + SM_b20835 0.38 -0.4
627,501 + SM_b20835 0.38 +1.6
627,501 + SM_b20835 0.38 -1.0
627,502 - SM_b20835 0.38 +1.3
627,569 - SM_b20835 0.45 -1.4
627,627 + SM_b20835 0.50 -0.4
627,628 - SM_b20835 0.51 -1.4
627,666 + SM_b20835 0.54 -0.1
627,667 - SM_b20835 0.54 -0.6
627,679 - SM_b20835 0.56 -0.4
627,753 - SM_b20835 0.63 +1.0
627,777 + SM_b20835 0.65 +1.5
627,777 + SM_b20835 0.65 -1.4
627,778 - SM_b20835 0.66 +3.3
627,778 - SM_b20835 0.66 +1.0
627,829 - SM_b20835 0.71 +0.1
627,885 + SM_b20835 0.76 +1.8
627,886 - SM_b20835 0.76 -0.6
627,886 - SM_b20835 0.76 +3.4
627,886 - SM_b20835 0.76 +0.5
628,107 + +0.4
628,130 + -1.0
628,131 - -1.6
628,232 + SM_b20836 0.40 +0.1
628,233 - SM_b20836 0.40 -2.6
628,321 + SM_b20836 0.67 -0.5
628,321 + SM_b20836 0.67 -0.0
628,321 + SM_b20836 0.67 +0.0
628,359 - SM_b20836 0.78 -0.0
628,405 + +0.6
628,476 + -1.2
628,476 + -0.6
628,477 - -0.6
628,477 - -0.3
628,481 + +0.4
628,481 + -0.2
628,481 + +0.1
628,482 - +0.2
628,505 - +0.7
628,644 + +0.1
628,645 - +1.0
628,645 - -0.0
628,697 + -0.2
628,697 + +0.3
628,697 + -1.4
628,697 + -0.7
628,697 + +0.5
628,698 - -1.1
628,698 - -2.1
628,698 - +1.1
628,854 + +0.4
628,855 - +0.2
628,972 + -0.8
628,972 + +0.1
628,972 + -1.1
628,973 - -1.2
628,973 - -0.0
628,973 - -0.6
628,974 + -0.5
629,059 + SM_b20837 0.39 -1.0
629,059 + SM_b20837 0.39 -0.5

Or see this region's nucleotide sequence