Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20676 and SM_b20677 are separated by 98 nucleotides SM_b20677 and SM_b20678 are separated by 47 nucleotides SM_b20678 and SM_b20679 are separated by 114 nucleotides
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
Position (kb)
1479
1480
1481 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1478.339 kb on + strand, within SM_b20676 at 1478.744 kb on - strand at 1478.793 kb on + strand at 1478.794 kb on - strand at 1478.794 kb on - strand at 1478.806 kb on - strand at 1478.806 kb on - strand at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.088 kb on - strand, within SM_b20677 at 1479.272 kb on + strand at 1479.273 kb on - strand at 1479.273 kb on - strand at 1479.480 kb on + strand, within SM_b20678 at 1479.568 kb on + strand, within SM_b20678 at 1480.118 kb on - strand, within SM_b20678 at 1480.354 kb on - strand, within SM_b20678 at 1480.501 kb on - strand at 1480.710 kb on - strand at 1481.081 kb on + strand, within SM_b20679 at 1481.245 kb on - strand, within SM_b20679 at 1481.246 kb on + strand, within SM_b20679 at 1481.247 kb on - strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.346 kb on - strand, within SM_b20679 at 1481.349 kb on - strand, within SM_b20679 at 1481.391 kb on + strand, within SM_b20679 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 1,478,339 + SM_b20676 0.62 +0.8 1,478,744 - -0.8 1,478,793 + -0.2 1,478,794 - +1.1 1,478,794 - -1.5 1,478,806 - -0.4 1,478,806 - +0.0 1,478,836 + SM_b20677 0.10 -0.4 1,478,836 + SM_b20677 0.10 -0.0 1,478,836 + SM_b20677 0.10 -0.2 1,478,836 + SM_b20677 0.10 -1.3 1,478,837 - SM_b20677 0.10 -0.0 1,478,837 - SM_b20677 0.10 +0.0 1,479,087 + SM_b20677 0.61 -0.2 1,479,087 + SM_b20677 0.61 -0.2 1,479,088 - SM_b20677 0.61 -0.5 1,479,272 + +0.8 1,479,273 - +0.3 1,479,273 - -2.4 1,479,480 + SM_b20678 0.12 -1.5 1,479,568 + SM_b20678 0.19 +1.6 1,480,118 - SM_b20678 0.62 -4.2 1,480,354 - SM_b20678 0.81 +1.3 1,480,501 - +0.4 1,480,710 - -0.2 1,481,081 + SM_b20679 0.42 -0.2 1,481,245 - SM_b20679 0.61 -0.7 1,481,246 + SM_b20679 0.61 +1.0 1,481,247 - SM_b20679 0.61 -0.6 1,481,345 + SM_b20679 0.72 -0.0 1,481,345 + SM_b20679 0.72 -2.4 1,481,346 - SM_b20679 0.72 -3.0 1,481,349 - SM_b20679 0.72 -1.3 1,481,391 + SM_b20679 0.77 -0.7 1,481,583 + -1.9 1,481,583 + -1.6 1,481,583 + +0.8
Or see this region's nucleotide sequence