Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20678

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20676 and SM_b20677 are separated by 98 nucleotidesSM_b20677 and SM_b20678 are separated by 47 nucleotidesSM_b20678 and SM_b20679 are separated by 114 nucleotides SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687 _b20676 SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277 _b20677 SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593 _b20678 SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592 _b20679 Position (kb) 1479 1480 1481Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1478.339 kb on + strand, within SM_b20676at 1478.744 kb on - strandat 1478.793 kb on + strandat 1478.794 kb on - strandat 1478.794 kb on - strandat 1478.806 kb on - strandat 1478.806 kb on - strandat 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.836 kb on + strand, within SM_b20677at 1478.837 kb on - strand, within SM_b20677at 1478.837 kb on - strand, within SM_b20677at 1479.087 kb on + strand, within SM_b20677at 1479.087 kb on + strand, within SM_b20677at 1479.088 kb on - strand, within SM_b20677at 1479.272 kb on + strandat 1479.273 kb on - strandat 1479.273 kb on - strandat 1479.480 kb on + strand, within SM_b20678at 1479.568 kb on + strand, within SM_b20678at 1480.118 kb on - strand, within SM_b20678at 1480.354 kb on - strand, within SM_b20678at 1480.501 kb on - strandat 1480.710 kb on - strandat 1481.081 kb on + strand, within SM_b20679at 1481.245 kb on - strand, within SM_b20679at 1481.246 kb on + strand, within SM_b20679at 1481.247 kb on - strand, within SM_b20679at 1481.345 kb on + strand, within SM_b20679at 1481.345 kb on + strand, within SM_b20679at 1481.346 kb on - strand, within SM_b20679at 1481.349 kb on - strand, within SM_b20679at 1481.391 kb on + strand, within SM_b20679at 1481.583 kb on + strandat 1481.583 kb on + strandat 1481.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,478,339 + SM_b20676 0.62 +0.8
1,478,744 - -0.8
1,478,793 + -0.2
1,478,794 - +1.1
1,478,794 - -1.5
1,478,806 - -0.4
1,478,806 - +0.0
1,478,836 + SM_b20677 0.10 -0.4
1,478,836 + SM_b20677 0.10 -0.0
1,478,836 + SM_b20677 0.10 -0.2
1,478,836 + SM_b20677 0.10 -1.3
1,478,837 - SM_b20677 0.10 -0.0
1,478,837 - SM_b20677 0.10 +0.0
1,479,087 + SM_b20677 0.61 -0.2
1,479,087 + SM_b20677 0.61 -0.2
1,479,088 - SM_b20677 0.61 -0.5
1,479,272 + +0.8
1,479,273 - +0.3
1,479,273 - -2.4
1,479,480 + SM_b20678 0.12 -1.5
1,479,568 + SM_b20678 0.19 +1.6
1,480,118 - SM_b20678 0.62 -4.2
1,480,354 - SM_b20678 0.81 +1.3
1,480,501 - +0.4
1,480,710 - -0.2
1,481,081 + SM_b20679 0.42 -0.2
1,481,245 - SM_b20679 0.61 -0.7
1,481,246 + SM_b20679 0.61 +1.0
1,481,247 - SM_b20679 0.61 -0.6
1,481,345 + SM_b20679 0.72 -0.0
1,481,345 + SM_b20679 0.72 -2.4
1,481,346 - SM_b20679 0.72 -3.0
1,481,349 - SM_b20679 0.72 -1.3
1,481,391 + SM_b20679 0.77 -0.7
1,481,583 + -1.9
1,481,583 + -1.6
1,481,583 + +0.8

Or see this region's nucleotide sequence