Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20660

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20659 and SM_b20660 are separated by 192 nucleotidesSM_b20660 and SM_b20661 are separated by 134 nucleotides SM_b20659: SM_b20659 - sugar uptake ABC transporter permease, at 1,459,807 to 1,460,739 _b20659 SM_b20660: SM_b20660 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,460,932 to 1,462,236 _b20660 SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438 _b20661 Position (kb) 1460 1461 1462 1463Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1460.004 kb on - strand, within SM_b20659at 1460.004 kb on - strand, within SM_b20659at 1460.004 kb on - strand, within SM_b20659at 1460.090 kb on + strand, within SM_b20659at 1460.475 kb on - strand, within SM_b20659at 1460.480 kb on + strand, within SM_b20659at 1460.481 kb on - strand, within SM_b20659at 1460.495 kb on + strand, within SM_b20659at 1460.496 kb on - strand, within SM_b20659at 1460.728 kb on + strandat 1460.877 kb on + strandat 1460.900 kb on + strandat 1460.943 kb on - strandat 1460.946 kb on - strandat 1461.035 kb on + strandat 1461.036 kb on - strandat 1461.062 kb on + strandat 1461.116 kb on + strand, within SM_b20660at 1461.245 kb on + strand, within SM_b20660at 1461.246 kb on - strand, within SM_b20660at 1461.402 kb on - strand, within SM_b20660at 1461.402 kb on - strand, within SM_b20660at 1461.404 kb on + strand, within SM_b20660at 1461.405 kb on - strand, within SM_b20660at 1461.405 kb on - strand, within SM_b20660at 1461.434 kb on - strand, within SM_b20660at 1461.506 kb on + strand, within SM_b20660at 1461.506 kb on + strand, within SM_b20660at 1461.507 kb on - strand, within SM_b20660at 1461.507 kb on - strand, within SM_b20660at 1461.521 kb on + strand, within SM_b20660at 1461.617 kb on + strandat 1461.617 kb on + strand, within SM_b20660at 1461.618 kb on - strand, within SM_b20660at 1461.824 kb on + strand, within SM_b20660at 1461.824 kb on + strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.825 kb on - strand, within SM_b20660at 1461.842 kb on + strand, within SM_b20660at 1461.843 kb on - strand, within SM_b20660at 1461.843 kb on - strand, within SM_b20660at 1461.855 kb on - strand, within SM_b20660at 1461.855 kb on - strand, within SM_b20660at 1461.942 kb on + strand, within SM_b20660at 1462.053 kb on + strand, within SM_b20660at 1462.136 kb on + strandat 1462.136 kb on + strandat 1462.137 kb on - strandat 1462.239 kb on + strandat 1462.240 kb on - strandat 1462.240 kb on - strandat 1462.240 kb on - strandat 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.607 kb on - strand, within SM_b20661at 1462.737 kb on + strand, within SM_b20661at 1462.874 kb on - strand, within SM_b20661at 1463.171 kb on + strand, within SM_b20661at 1463.179 kb on + strand, within SM_b20661

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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1,460,004 - SM_b20659 0.21 -0.9
1,460,004 - SM_b20659 0.21 +0.6
1,460,004 - SM_b20659 0.21 -0.6
1,460,090 + SM_b20659 0.30 +0.4
1,460,475 - SM_b20659 0.72 -0.5
1,460,480 + SM_b20659 0.72 +0.9
1,460,481 - SM_b20659 0.72 -2.3
1,460,495 + SM_b20659 0.74 -0.9
1,460,496 - SM_b20659 0.74 -0.4
1,460,728 + -0.7
1,460,877 + -1.1
1,460,900 + +0.4
1,460,943 - -0.1
1,460,946 - -0.3
1,461,035 + +0.2
1,461,036 - -0.4
1,461,062 + +0.0
1,461,116 + SM_b20660 0.14 +0.7
1,461,245 + SM_b20660 0.24 +2.8
1,461,246 - SM_b20660 0.24 -0.2
1,461,402 - SM_b20660 0.36 -0.3
1,461,402 - SM_b20660 0.36 +0.2
1,461,404 + SM_b20660 0.36 +1.0
1,461,405 - SM_b20660 0.36 +0.2
1,461,405 - SM_b20660 0.36 +1.8
1,461,434 - SM_b20660 0.38 +0.3
1,461,506 + SM_b20660 0.44 +0.2
1,461,506 + SM_b20660 0.44 +0.2
1,461,507 - SM_b20660 0.44 +0.3
1,461,507 - SM_b20660 0.44 -0.5
1,461,521 + SM_b20660 0.45 -1.6
1,461,617 + +2.3
1,461,617 + SM_b20660 0.52 -0.2
1,461,618 - SM_b20660 0.53 +0.6
1,461,824 + SM_b20660 0.68 +0.6
1,461,824 + SM_b20660 0.68 +0.3
1,461,825 - SM_b20660 0.68 -0.4
1,461,825 - SM_b20660 0.68 -0.3
1,461,825 - SM_b20660 0.68 +1.7
1,461,842 + SM_b20660 0.70 -0.2
1,461,843 - SM_b20660 0.70 +0.2
1,461,843 - SM_b20660 0.70 +0.6
1,461,855 - SM_b20660 0.71 +0.8
1,461,855 - SM_b20660 0.71 -1.3
1,461,942 + SM_b20660 0.77 -2.2
1,462,053 + SM_b20660 0.86 -2.2
1,462,136 + +0.0
1,462,136 + +1.3
1,462,137 - -0.3
1,462,239 + -1.0
1,462,240 - +0.3
1,462,240 - +1.0
1,462,240 - +1.3
1,462,588 + SM_b20661 0.20 -0.3
1,462,588 + SM_b20661 0.20 -0.3
1,462,588 + SM_b20661 0.20 +0.6
1,462,588 + SM_b20661 0.20 +0.5
1,462,607 - SM_b20661 0.22 -0.3
1,462,737 + SM_b20661 0.34 +0.7
1,462,874 - SM_b20661 0.47 -0.9
1,463,171 + SM_b20661 0.75 -0.4
1,463,179 + SM_b20661 0.76 -0.4

Or see this region's nucleotide sequence