Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20419

Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20417 and SM_b20418 are separated by 8 nucleotidesSM_b20418 and SM_b20419 overlap by 1 nucleotidesSM_b20419 and SM_b20420 are separated by 121 nucleotidesSM_b20420 and SM_b20421 are separated by 152 nucleotides SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964 _b20417 SM_b20418: SM_b20418 - glycerol-3-phosphate ABC transporter permease, at 431,973 to 432,821 _b20418 SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870 _b20419 SM_b20420: SM_b20420 - glutathione S-transferase, at 433,992 to 434,618 _b20420 SM_b20421: SM_b20421 - transposase, at 434,771 to 435,847 _b20421 Position (kb) 432 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 431.828 kb on - strand, within SM_b20417at 431.828 kb on - strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.837 kb on - strand, within SM_b20417at 431.837 kb on - strand, within SM_b20417at 431.838 kb on + strand, within SM_b20417at 431.838 kb on + strand, within SM_b20417at 431.957 kb on - strandat 432.001 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.055 kb on - strandat 432.055 kb on - strandat 432.057 kb on + strandat 432.057 kb on + strandat 432.058 kb on - strand, within SM_b20418at 432.060 kb on - strand, within SM_b20418at 432.108 kb on - strand, within SM_b20418at 432.145 kb on - strand, within SM_b20418at 432.373 kb on - strand, within SM_b20418at 432.373 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.572 kb on + strand, within SM_b20418at 432.603 kb on + strand, within SM_b20418at 432.604 kb on - strand, within SM_b20418at 432.618 kb on + strand, within SM_b20418at 432.619 kb on - strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.721 kb on - strand, within SM_b20418at 432.721 kb on - strand, within SM_b20418at 432.819 kb on + strandat 432.820 kb on - strandat 432.857 kb on + strandat 432.857 kb on + strandat 432.857 kb on + strandat 432.858 kb on - strandat 433.039 kb on + strand, within SM_b20419at 433.057 kb on + strand, within SM_b20419at 433.057 kb on + strand, within SM_b20419at 433.090 kb on + strand, within SM_b20419at 433.115 kb on + strand, within SM_b20419at 433.132 kb on + strand, within SM_b20419at 433.133 kb on - strand, within SM_b20419at 433.389 kb on - strand, within SM_b20419at 433.389 kb on - strand, within SM_b20419at 433.389 kb on - strand, within SM_b20419at 433.389 kb on - strand, within SM_b20419at 433.642 kb on + strand, within SM_b20419at 433.643 kb on - strand, within SM_b20419at 433.727 kb on + strand, within SM_b20419at 433.727 kb on + strand, within SM_b20419at 433.728 kb on - strand, within SM_b20419at 433.868 kb on + strandat 434.003 kb on - strandat 434.003 kb on - strandat 434.003 kb on - strandat 434.004 kb on + strandat 434.011 kb on + strandat 434.089 kb on + strand, within SM_b20420at 434.090 kb on - strand, within SM_b20420at 434.090 kb on - strand, within SM_b20420at 434.202 kb on + strand, within SM_b20420at 434.202 kb on + strand, within SM_b20420at 434.203 kb on - strand, within SM_b20420at 434.203 kb on - strand, within SM_b20420at 434.217 kb on + strand, within SM_b20420at 434.234 kb on + strand, within SM_b20420at 434.234 kb on + strand, within SM_b20420at 434.235 kb on - strand, within SM_b20420at 434.268 kb on + strand, within SM_b20420at 434.268 kb on + strand, within SM_b20420at 434.268 kb on + strand, within SM_b20420at 434.458 kb on + strand, within SM_b20420at 434.459 kb on - strand, within SM_b20420at 434.459 kb on - strand, within SM_b20420at 434.459 kb on - strand, within SM_b20420at 434.462 kb on + strand, within SM_b20420at 434.462 kb on + strand, within SM_b20420at 434.484 kb on + strand, within SM_b20420at 434.485 kb on - strandat 434.538 kb on - strand, within SM_b20420at 434.544 kb on + strand, within SM_b20420at 434.559 kb on + strandat 434.559 kb on + strandat 434.560 kb on - strandat 434.560 kb on - strandat 434.560 kb on - strandat 434.560 kb on - strandat 434.617 kb on - strandat 434.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
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431,828 - SM_b20417 0.84 -0.2
431,828 - SM_b20417 0.84 -1.2
431,836 + SM_b20417 0.85 +0.3
431,836 + SM_b20417 0.85 -0.9
431,836 + SM_b20417 0.85 +0.0
431,837 - SM_b20417 0.85 -0.7
431,837 - SM_b20417 0.85 +0.5
431,838 + SM_b20417 0.86 +0.8
431,838 + SM_b20417 0.86 -1.5
431,957 - +0.6
432,001 + -0.9
432,054 + -1.0
432,054 + -0.5
432,054 + +0.1
432,054 + +0.2
432,055 - -0.6
432,055 - +0.4
432,057 + -0.6
432,057 + +1.1
432,058 - SM_b20418 0.10 -1.2
432,060 - SM_b20418 0.10 +0.9
432,108 - SM_b20418 0.16 +0.0
432,145 - SM_b20418 0.20 -0.1
432,373 - SM_b20418 0.47 -1.0
432,373 - SM_b20418 0.47 -0.1
432,409 - SM_b20418 0.51 +1.7
432,409 - SM_b20418 0.51 +1.1
432,409 - SM_b20418 0.51 +0.2
432,572 + SM_b20418 0.71 -1.4
432,603 + SM_b20418 0.74 -1.2
432,604 - SM_b20418 0.74 -0.7
432,618 + SM_b20418 0.76 +0.2
432,619 - SM_b20418 0.76 +0.4
432,720 + SM_b20418 0.88 +1.1
432,720 + SM_b20418 0.88 +0.1
432,720 + SM_b20418 0.88 -1.6
432,721 - SM_b20418 0.88 +2.6
432,721 - SM_b20418 0.88 -0.2
432,819 + -1.3
432,820 - +0.5
432,857 + -0.6
432,857 + -0.6
432,857 + +0.1
432,858 - -0.1
433,039 + SM_b20419 0.21 +0.8
433,057 + SM_b20419 0.22 -2.3
433,057 + SM_b20419 0.22 -0.0
433,090 + SM_b20419 0.26 +0.5
433,115 + SM_b20419 0.28 +1.2
433,132 + SM_b20419 0.30 +0.6
433,133 - SM_b20419 0.30 +0.5
433,389 - SM_b20419 0.54 -1.3
433,389 - SM_b20419 0.54 +0.3
433,389 - SM_b20419 0.54 +2.2
433,389 - SM_b20419 0.54 -0.1
433,642 + SM_b20419 0.78 -1.6
433,643 - SM_b20419 0.78 -0.5
433,727 + SM_b20419 0.86 +0.1
433,727 + SM_b20419 0.86 +0.0
433,728 - SM_b20419 0.86 +1.7
433,868 + -0.4
434,003 - -0.7
434,003 - -1.1
434,003 - +0.1
434,004 + -0.3
434,011 + -0.6
434,089 + SM_b20420 0.15 +0.0
434,090 - SM_b20420 0.16 +1.1
434,090 - SM_b20420 0.16 +0.2
434,202 + SM_b20420 0.33 -1.0
434,202 + SM_b20420 0.33 -0.6
434,203 - SM_b20420 0.34 +0.7
434,203 - SM_b20420 0.34 +0.7
434,217 + SM_b20420 0.36 +0.4
434,234 + SM_b20420 0.39 -0.7
434,234 + SM_b20420 0.39 -1.2
434,235 - SM_b20420 0.39 -0.6
434,268 + SM_b20420 0.44 -0.5
434,268 + SM_b20420 0.44 -1.0
434,268 + SM_b20420 0.44 -0.0
434,458 + SM_b20420 0.74 -0.2
434,459 - SM_b20420 0.74 +0.1
434,459 - SM_b20420 0.74 -0.0
434,459 - SM_b20420 0.74 -0.3
434,462 + SM_b20420 0.75 -1.2
434,462 + SM_b20420 0.75 +1.9
434,484 + SM_b20420 0.78 +0.6
434,485 - +0.3
434,538 - SM_b20420 0.87 -0.0
434,544 + SM_b20420 0.88 -0.7
434,559 + +0.0
434,559 + +0.7
434,560 - +0.4
434,560 - -2.6
434,560 - +0.1
434,560 - -1.4
434,617 - -1.3
434,703 - +2.7

Or see this region's nucleotide sequence