Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20415 and SM_b20416 are separated by 368 nucleotides SM_b20416 and SM_b20417 are separated by 117 nucleotides
SM_b20415: SM_b20415 - oxidoreductase, at 428,015 to 429,304
_b20415
SM_b20416: SM_b20416 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 429,673 to 430,965
_b20416
SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964
_b20417
Position (kb) 429
430
431 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 429.055 kb on + strand, within SM_b20415 at 429.056 kb on - strand, within SM_b20415 at 429.095 kb on + strand, within SM_b20415 at 429.095 kb on + strand, within SM_b20415 at 429.164 kb on + strand, within SM_b20415 at 429.165 kb on - strand, within SM_b20415 at 429.165 kb on - strand, within SM_b20415 at 429.293 kb on + strand at 429.441 kb on + strand at 429.441 kb on + strand at 429.441 kb on + strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.442 kb on - strand at 429.481 kb on + strand at 429.526 kb on + strand at 429.526 kb on + strand at 429.527 kb on - strand at 429.655 kb on - strand at 429.669 kb on + strand at 429.669 kb on + strand at 429.774 kb on + strand at 429.827 kb on - strand, within SM_b20416 at 429.857 kb on - strand, within SM_b20416 at 429.857 kb on - strand, within SM_b20416 at 430.025 kb on - strand, within SM_b20416 at 430.045 kb on + strand, within SM_b20416 at 430.049 kb on - strand, within SM_b20416 at 430.049 kb on - strand, within SM_b20416 at 430.083 kb on + strand, within SM_b20416 at 430.085 kb on - strand, within SM_b20416 at 430.291 kb on + strand, within SM_b20416 at 430.292 kb on - strand, within SM_b20416 at 430.355 kb on - strand, within SM_b20416 at 430.420 kb on - strand, within SM_b20416 at 430.537 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.540 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on + strand, within SM_b20416 at 430.618 kb on - strand, within SM_b20416 at 430.619 kb on - strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.695 kb on + strand, within SM_b20416 at 430.696 kb on - strand, within SM_b20416 at 430.696 kb on - strand, within SM_b20416 at 430.718 kb on - strand, within SM_b20416 at 430.718 kb on - strand, within SM_b20416 at 430.745 kb on - strand, within SM_b20416 at 430.745 kb on - strand, within SM_b20416 at 430.845 kb on + strand at 431.119 kb on + strand at 431.120 kb on - strand at 431.120 kb on - strand at 431.189 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.420 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.492 kb on - strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.493 kb on + strand, within SM_b20417 at 431.749 kb on + strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.750 kb on - strand, within SM_b20417 at 431.764 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.828 kb on - strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.836 kb on + strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.837 kb on - strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.838 kb on + strand, within SM_b20417 at 431.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 429,055 + SM_b20415 0.81 +0.7 429,056 - SM_b20415 0.81 +0.1 429,095 + SM_b20415 0.84 +0.0 429,095 + SM_b20415 0.84 -0.1 429,164 + SM_b20415 0.89 +1.8 429,165 - SM_b20415 0.89 -0.5 429,165 - SM_b20415 0.89 +1.2 429,293 + +1.8 429,441 + +0.0 429,441 + +0.8 429,441 + +2.3 429,442 - -1.1 429,442 - -0.2 429,442 - +0.9 429,442 - -0.4 429,481 + +0.1 429,526 + -0.6 429,526 + -0.0 429,527 - -0.5 429,655 - +0.6 429,669 + +0.3 429,669 + +0.9 429,774 + +1.9 429,827 - SM_b20416 0.12 +0.9 429,857 - SM_b20416 0.14 +1.9 429,857 - SM_b20416 0.14 +0.1 430,025 - SM_b20416 0.27 +1.9 430,045 + SM_b20416 0.29 -0.2 430,049 - SM_b20416 0.29 +0.0 430,049 - SM_b20416 0.29 -0.3 430,083 + SM_b20416 0.32 +2.7 430,085 - SM_b20416 0.32 +0.3 430,291 + SM_b20416 0.48 +0.7 430,292 - SM_b20416 0.48 +0.3 430,355 - SM_b20416 0.53 -0.1 430,420 - SM_b20416 0.58 +0.8 430,537 + SM_b20416 0.67 +1.1 430,540 + SM_b20416 0.67 -1.0 430,540 + SM_b20416 0.67 +1.1 430,540 + SM_b20416 0.67 +0.9 430,618 + SM_b20416 0.73 -1.0 430,618 + SM_b20416 0.73 +0.7 430,618 + SM_b20416 0.73 +0.9 430,618 - SM_b20416 0.73 +0.8 430,619 - SM_b20416 0.73 -0.8 430,695 + SM_b20416 0.79 -0.0 430,695 + SM_b20416 0.79 +0.1 430,695 + SM_b20416 0.79 +1.4 430,695 + SM_b20416 0.79 +0.3 430,696 - SM_b20416 0.79 -0.2 430,696 - SM_b20416 0.79 +0.6 430,718 - SM_b20416 0.81 +1.8 430,718 - SM_b20416 0.81 +0.8 430,745 - SM_b20416 0.83 +0.2 430,745 - SM_b20416 0.83 -0.0 430,845 + -0.7 431,119 + +1.1 431,120 - -0.9 431,120 - +0.1 431,189 - SM_b20417 0.12 +0.3 431,420 - SM_b20417 0.38 -4.4 431,420 - SM_b20417 0.38 -0.0 431,492 - SM_b20417 0.46 +1.1 431,492 - SM_b20417 0.46 +0.5 431,492 - SM_b20417 0.46 -0.7 431,493 + SM_b20417 0.46 -2.6 431,493 + SM_b20417 0.46 +0.5 431,749 + SM_b20417 0.76 +0.5 431,750 - SM_b20417 0.76 -1.3 431,750 - SM_b20417 0.76 +1.4 431,764 - SM_b20417 0.77 +0.2 431,828 - SM_b20417 0.84 -0.2 431,828 - SM_b20417 0.84 -1.2 431,836 + SM_b20417 0.85 +0.3 431,836 + SM_b20417 0.85 -0.9 431,836 + SM_b20417 0.85 +0.0 431,837 - SM_b20417 0.85 -0.7 431,837 - SM_b20417 0.85 +0.5 431,838 + SM_b20417 0.86 +0.8 431,838 + SM_b20417 0.86 -1.5 431,957 - +0.6
Or see this region's nucleotide sequence