Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20352 and SM_b20353 are separated by 5 nucleotides SM_b20353 and SM_b20354 overlap by 4 nucleotides
SM_b20352: SM_b20352 - sugar ABC transporter permease, at 359,762 to 360,826
_b20352
SM_b20353: SM_b20353 - oxidoreductase, at 360,832 to 361,866
_b20353
SM_b20354: SM_b20354 - hypothetical protein, at 361,863 to 363,782
_b20354
Position (kb) 360
361
362 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 359.914 kb on - strand, within SM_b20352 at 359.914 kb on - strand, within SM_b20352 at 360.087 kb on - strand, within SM_b20352 at 360.163 kb on + strand, within SM_b20352 at 360.377 kb on + strand, within SM_b20352 at 360.390 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.392 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.486 kb on - strand, within SM_b20352 at 360.992 kb on - strand, within SM_b20353 at 361.233 kb on - strand, within SM_b20353 at 361.284 kb on - strand, within SM_b20353 at 361.390 kb on + strand, within SM_b20353 at 361.519 kb on + strand, within SM_b20353 at 361.520 kb on - strand, within SM_b20353 at 361.636 kb on - strand, within SM_b20353 at 361.764 kb on + strand at 361.813 kb on + strand at 361.814 kb on - strand at 361.890 kb on + strand at 361.891 kb on + strand at 361.892 kb on - strand at 361.934 kb on - strand at 362.159 kb on + strand, within SM_b20354 at 362.466 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.475 kb on + strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.476 kb on - strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354 at 362.686 kb on + strand, within SM_b20354
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 359,914 - SM_b20352 0.14 -0.1 359,914 - SM_b20352 0.14 +5.3 360,087 - SM_b20352 0.31 -0.0 360,163 + SM_b20352 0.38 -0.2 360,377 + SM_b20352 0.58 -0.4 360,390 - SM_b20352 0.59 +0.5 360,392 - SM_b20352 0.59 -0.6 360,392 - SM_b20352 0.59 -1.0 360,392 - SM_b20352 0.59 +0.0 360,486 - SM_b20352 0.68 -1.4 360,486 - SM_b20352 0.68 -0.1 360,486 - SM_b20352 0.68 -0.5 360,992 - SM_b20353 0.15 -2.2 361,233 - SM_b20353 0.39 -0.4 361,284 - SM_b20353 0.44 -0.7 361,390 + SM_b20353 0.54 -1.4 361,519 + SM_b20353 0.66 +2.4 361,520 - SM_b20353 0.66 -0.5 361,636 - SM_b20353 0.78 -0.2 361,764 + -0.2 361,813 + +0.2 361,814 - -0.7 361,890 + +0.4 361,891 + +1.2 361,892 - +0.7 361,934 - -0.2 362,159 + SM_b20354 0.15 -0.2 362,466 + SM_b20354 0.31 -0.0 362,475 + SM_b20354 0.32 +0.6 362,475 + SM_b20354 0.32 -0.8 362,475 + SM_b20354 0.32 -0.1 362,475 + SM_b20354 0.32 -0.2 362,476 - SM_b20354 0.32 +0.5 362,476 - SM_b20354 0.32 +0.1 362,686 + SM_b20354 0.43 +0.1 362,686 + SM_b20354 0.43 -1.2
Or see this region's nucleotide sequence