Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20330 and SM_b20331 are separated by 212 nucleotides SM_b20331 and SM_b20332 are separated by 691 nucleotides
SM_b20330: SM_b20330 - glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) <small>(from data)</small>, at 333,286 to 334,383
_b20330
SM_b20331: SM_b20331 - hypothetical protein, at 334,596 to 334,952
_b20331
SM_b20332: SM_b20332 - hypothetical protein, at 335,644 to 336,585
_b20332
Position (kb) 334
335 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 333.748 kb on + strand, within SM_b20330 at 333.748 kb on + strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.749 kb on - strand, within SM_b20330 at 333.967 kb on + strand at 333.968 kb on - strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.119 kb on + strand, within SM_b20330 at 334.213 kb on + strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330 at 334.214 kb on - strand, within SM_b20330 at 334.391 kb on - strand at 334.466 kb on - strand at 334.495 kb on + strand at 334.574 kb on - strand at 334.598 kb on - strand at 334.598 kb on - strand at 334.618 kb on + strand at 335.004 kb on + strand at 335.004 kb on + strand at 335.004 kb on + strand at 335.043 kb on + strand at 335.136 kb on + strand at 335.147 kb on + strand at 335.148 kb on - strand at 335.148 kb on - strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.154 kb on + strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.155 kb on - strand at 335.158 kb on + strand at 335.159 kb on - strand at 335.159 kb on - strand at 335.236 kb on + strand at 335.327 kb on - strand at 335.395 kb on + strand at 335.396 kb on - strand at 335.396 kb on - strand at 335.423 kb on + strand at 335.423 kb on + strand at 335.424 kb on - strand at 335.566 kb on - strand at 335.566 kb on - strand at 335.747 kb on + strand, within SM_b20332 at 335.747 kb on + strand, within SM_b20332 at 335.795 kb on - strand, within SM_b20332 at 335.887 kb on + strand, within SM_b20332 at 335.888 kb on - strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.920 kb on + strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332 at 335.921 kb on - strand, within SM_b20332
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 333,748 + SM_b20330 0.42 +0.7 333,748 + SM_b20330 0.42 +0.8 333,749 - SM_b20330 0.42 -0.4 333,749 - SM_b20330 0.42 +0.7 333,967 + +2.2 333,968 - SM_b20330 0.62 -0.1 334,119 + SM_b20330 0.76 -0.4 334,119 + SM_b20330 0.76 +0.5 334,213 + SM_b20330 0.84 +1.2 334,214 - SM_b20330 0.85 -0.3 334,214 - SM_b20330 0.85 -0.6 334,391 - -0.6 334,466 - -1.4 334,495 + -0.4 334,574 - +1.1 334,598 - -0.6 334,598 - +0.6 334,618 + +0.2 335,004 + +1.2 335,004 + +0.2 335,004 + +0.2 335,043 + +1.1 335,136 + +0.0 335,147 + +0.9 335,148 - +0.1 335,148 - -0.8 335,154 + +0.7 335,154 + +0.8 335,154 + -0.4 335,154 + +0.1 335,155 - +0.1 335,155 - -0.1 335,155 - +0.0 335,158 + +1.4 335,159 - -1.6 335,159 - -1.4 335,236 + +0.9 335,327 - -0.4 335,395 + +0.6 335,396 - +0.2 335,396 - +4.4 335,423 + +3.0 335,423 + -1.2 335,424 - -0.8 335,566 - +0.0 335,566 - +0.9 335,747 + SM_b20332 0.11 -1.1 335,747 + SM_b20332 0.11 +1.3 335,795 - SM_b20332 0.16 +1.7 335,887 + SM_b20332 0.26 -0.9 335,888 - SM_b20332 0.26 +2.3 335,920 + SM_b20332 0.29 +1.0 335,920 + SM_b20332 0.29 -1.3 335,920 + SM_b20332 0.29 +0.6 335,921 - SM_b20332 0.29 -0.9 335,921 - SM_b20332 0.29 +0.4 335,921 - SM_b20332 0.29 -1.4
Or see this region's nucleotide sequence