Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20317 and SM_b20318 are separated by 1 nucleotides SM_b20318 and SM_b20319 are separated by 50 nucleotides
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799
_b20319
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.746 kb on - strand, within SM_b20317 at 319.834 kb on + strand, within SM_b20317 at 320.296 kb on + strand, within SM_b20317 at 320.297 kb on - strand, within SM_b20317 at 320.402 kb on + strand at 320.497 kb on - strand at 320.497 kb on - strand at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318 at 321.594 kb on - strand at 321.661 kb on + strand at 321.731 kb on + strand, within SM_b20319 at 321.733 kb on + strand, within SM_b20319 at 322.371 kb on + strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.376 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 319,746 - SM_b20317 0.51 -0.8 319,834 + SM_b20317 0.57 -0.2 320,296 + SM_b20317 0.87 +0.2 320,297 - SM_b20317 0.87 +0.6 320,402 + +0.9 320,497 - -0.3 320,497 - +0.6 320,595 + -0.0 320,595 + -0.2 320,596 - +0.1 320,753 + SM_b20318 0.25 +0.9 320,753 + SM_b20318 0.25 -2.3 320,753 + SM_b20318 0.25 -1.1 320,753 + SM_b20318 0.25 +0.2 320,785 + SM_b20318 0.28 +0.1 320,786 - SM_b20318 0.28 -0.7 320,786 - SM_b20318 0.28 +2.7 320,786 - SM_b20318 0.28 -0.7 320,812 + SM_b20318 0.30 +0.4 320,813 - SM_b20318 0.30 -0.2 320,813 - SM_b20318 0.30 -0.0 320,873 + SM_b20318 0.36 +0.2 321,083 - SM_b20318 0.56 -1.6 321,121 + SM_b20318 0.60 -0.2 321,122 - SM_b20318 0.60 -1.7 321,122 - SM_b20318 0.60 -0.2 321,122 - SM_b20318 0.60 -1.4 321,122 - SM_b20318 0.60 -1.3 321,123 + SM_b20318 0.60 -0.4 321,123 + SM_b20318 0.60 +0.3 321,123 + -1.4 321,154 - SM_b20318 0.63 +1.9 321,158 - SM_b20318 0.64 +0.0 321,235 + SM_b20318 0.71 -1.6 321,264 + SM_b20318 0.74 -2.8 321,265 - SM_b20318 0.74 -1.1 321,594 - +0.3 321,661 + -1.3 321,731 + SM_b20319 0.12 -0.3 321,733 + SM_b20319 0.12 -0.0 322,371 + SM_b20319 0.65 +0.2 322,372 - SM_b20319 0.65 +1.2 322,372 - SM_b20319 0.65 +0.0 322,376 - SM_b20319 0.65 -0.5 322,479 - SM_b20319 0.74 +1.9 322,479 - SM_b20319 0.74 -0.4 322,479 - SM_b20319 0.74 +0.2
Or see this region's nucleotide sequence