Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20315 and SM_b20316 are separated by 79 nucleotides SM_b20316 and SM_b20317 are separated by 117 nucleotides
SM_b20315: SM_b20315 - sugar ABC transporter permease, at 316,763 to 317,749
_b20315
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1 at 316.998 kb on + strand, within SM_b20315 at 317.229 kb on - strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.429 kb on + strand, within SM_b20315 at 317.430 kb on - strand, within SM_b20315 at 317.432 kb on - strand, within SM_b20315 at 317.505 kb on - strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.516 kb on + strand, within SM_b20315 at 317.557 kb on - strand, within SM_b20315 at 317.573 kb on + strand, within SM_b20315 at 317.729 kb on + strand at 317.730 kb on - strand at 317.815 kb on - strand at 317.838 kb on + strand at 317.839 kb on - strand at 317.986 kb on - strand, within SM_b20316 at 318.212 kb on + strand, within SM_b20316 at 318.430 kb on - strand, within SM_b20316 at 318.591 kb on + strand, within SM_b20316 at 318.610 kb on + strand, within SM_b20316 at 318.649 kb on - strand, within SM_b20316 at 318.691 kb on - strand, within SM_b20316 at 318.727 kb on - strand, within SM_b20316 at 318.800 kb on + strand at 318.801 kb on - strand at 318.801 kb on - strand at 318.810 kb on + strand at 318.810 kb on + strand at 318.811 kb on - strand at 318.929 kb on + strand at 319.067 kb on + strand at 319.071 kb on + strand at 319.071 kb on + strand at 319.112 kb on + strand, within SM_b20317 at 319.113 kb on - strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.159 kb on - strand, within SM_b20317 at 319.227 kb on + strand, within SM_b20317 at 319.746 kb on - strand, within SM_b20317
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 316,998 + SM_b20315 0.24 +0.1 317,229 - SM_b20315 0.47 +0.9 317,429 + SM_b20315 0.67 -0.2 317,429 + SM_b20315 0.67 -1.9 317,429 + SM_b20315 0.67 -1.6 317,430 - SM_b20315 0.68 +0.4 317,432 - SM_b20315 0.68 +0.7 317,505 - SM_b20315 0.75 -0.6 317,516 + SM_b20315 0.76 -0.6 317,516 + SM_b20315 0.76 -0.2 317,516 + SM_b20315 0.76 +0.0 317,557 - SM_b20315 0.80 +1.3 317,573 + SM_b20315 0.82 -0.1 317,729 + -1.0 317,730 - -0.9 317,815 - -0.0 317,838 + +0.9 317,839 - -0.5 317,986 - SM_b20316 0.16 -1.1 318,212 + SM_b20316 0.38 +1.2 318,430 - SM_b20316 0.60 -0.3 318,591 + SM_b20316 0.76 -0.9 318,610 + SM_b20316 0.78 -0.2 318,649 - SM_b20316 0.82 -0.2 318,691 - SM_b20316 0.86 -1.3 318,727 - SM_b20316 0.90 -0.8 318,800 + +0.8 318,801 - -0.2 318,801 - -0.8 318,810 + -0.4 318,810 + +0.1 318,811 - -0.1 318,929 + -0.1 319,067 + +0.4 319,071 + -0.5 319,071 + -0.7 319,112 + SM_b20317 0.11 +1.4 319,113 - SM_b20317 0.11 -0.3 319,157 + SM_b20317 0.13 -1.1 319,157 + SM_b20317 0.13 +0.2 319,159 - SM_b20317 0.14 +0.3 319,227 + SM_b20317 0.18 +0.2 319,746 - SM_b20317 0.51 -0.8
Or see this region's nucleotide sequence