Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20153 and SM_b20154 are separated by 50 nucleotides SM_b20154 and SM_b20155 are separated by 510 nucleotides
SM_b20153: SM_b20153 - hypothetical protein, at 169,058 to 170,701
_b20153
SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738
_b20154
SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099
_b20155
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 169.838 kb on + strand, within SM_b20153 at 169.838 kb on + strand, within SM_b20153 at 169.839 kb on - strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.159 kb on - strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.280 kb on - strand, within SM_b20153 at 170.300 kb on - strand, within SM_b20153 at 170.395 kb on - strand, within SM_b20153 at 170.716 kb on - strand at 170.753 kb on + strand at 170.753 kb on + strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.886 kb on - strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.270 kb on + strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.617 kb on - strand, within SM_b20154 at 171.770 kb on - strand at 172.004 kb on + strand at 172.005 kb on - strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.163 kb on + strand at 172.164 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.223 kb on - strand at 172.229 kb on - strand at 172.229 kb on - strand at 172.248 kb on - strand at 172.399 kb on + strand at 172.400 kb on - strand at 172.504 kb on + strand, within SM_b20155 at 172.634 kb on + strand, within SM_b20155 at 172.635 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155 at 172.691 kb on - strand, within SM_b20155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 169,838 + SM_b20153 0.47 -0.4 169,838 + SM_b20153 0.47 -0.8 169,839 - SM_b20153 0.48 +0.2 169,860 + SM_b20153 0.49 +0.0 169,860 + SM_b20153 0.49 -2.9 169,861 - SM_b20153 0.49 -0.2 169,861 - SM_b20153 0.49 +0.2 169,861 - SM_b20153 0.49 -0.6 169,861 - SM_b20153 0.49 -0.9 170,012 + SM_b20153 0.58 -0.3 170,012 + SM_b20153 0.58 +2.8 170,012 + SM_b20153 0.58 -3.0 170,159 - SM_b20153 0.67 -1.8 170,210 + SM_b20153 0.70 +1.2 170,210 + SM_b20153 0.70 +0.5 170,211 - SM_b20153 0.70 -0.3 170,211 - SM_b20153 0.70 -0.1 170,211 - SM_b20153 0.70 +1.2 170,236 + SM_b20153 0.72 +0.1 170,236 + SM_b20153 0.72 +1.2 170,274 + SM_b20153 0.74 -1.1 170,274 + SM_b20153 0.74 +1.6 170,275 - SM_b20153 0.74 -1.2 170,275 - SM_b20153 0.74 -0.2 170,279 + SM_b20153 0.74 -0.3 170,279 + SM_b20153 0.74 -0.8 170,280 - SM_b20153 0.74 +0.0 170,300 - SM_b20153 0.76 +2.1 170,395 - SM_b20153 0.81 +0.4 170,716 - -0.9 170,753 + -0.9 170,753 + -0.5 170,754 - -0.3 170,754 - -0.2 170,754 - +1.1 170,754 - +0.5 170,886 - SM_b20154 0.14 -0.3 171,071 + SM_b20154 0.32 +0.9 171,071 + SM_b20154 0.32 -1.1 171,270 + SM_b20154 0.52 +0.2 171,416 - SM_b20154 0.67 -0.9 171,416 - SM_b20154 0.67 -1.6 171,616 + SM_b20154 0.88 +0.6 171,616 + SM_b20154 0.88 -0.9 171,616 + SM_b20154 0.88 -1.0 171,617 - SM_b20154 0.88 -0.8 171,770 - +0.5 172,004 + +0.4 172,005 - +1.1 172,163 + +0.3 172,163 + -0.4 172,163 + +1.1 172,164 - +0.6 172,223 - +0.5 172,223 - -0.9 172,223 - -0.3 172,223 - +0.1 172,229 - -1.3 172,229 - +0.2 172,248 - +0.2 172,399 + +0.2 172,400 - -1.3 172,504 + SM_b20155 0.14 +0.4 172,634 + SM_b20155 0.21 -1.8 172,635 - SM_b20155 0.21 +1.2 172,691 - SM_b20155 0.24 +0.7 172,691 - SM_b20155 0.24 -0.1
Or see this region's nucleotide sequence