Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20059 and SM_b20060 are separated by 91 nucleotides SM_b20060 and SM_b22003 are separated by 158 nucleotides SM_b22003 and SM_b20061 are separated by 160 nucleotides SM_b20061 and SM_b20062 are separated by 103 nucleotides
SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548
_b20058
SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331
_b20059
SM_b20060: SM_b20060 - ISRm5 transposase, at 70,423 to 71,619
_b20060
SM_b22003: SM_b22003 - hypothetical protein, at 71,778 to 72,098
_b22003
SM_b20061: SM_b20061 - hypothetical protein, at 72,259 to 72,414
_b20061
SM_b20062: SM_b20062 - hypothetical protein, at 72,518 to 72,766
_b20062
Position (kb) 70
71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 69.594 kb on + strand at 69.595 kb on - strand at 69.857 kb on - strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.897 kb on + strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 69.898 kb on - strand, within SM_b20059 at 70.096 kb on - strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.210 kb on + strand, within SM_b20059 at 70.330 kb on - strand at 71.693 kb on - strand at 71.755 kb on + strand at 71.756 kb on - strand at 71.756 kb on - strand at 71.792 kb on + strand at 71.792 kb on + strand at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.811 kb on + strand, within SM_b22003 at 71.812 kb on - strand, within SM_b22003 at 71.881 kb on + strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.882 kb on - strand, within SM_b22003 at 71.950 kb on + strand, within SM_b22003 at 71.988 kb on + strand, within SM_b22003 at 71.989 kb on - strand, within SM_b22003 at 72.103 kb on - strand at 72.103 kb on - strand at 72.108 kb on + strand at 72.151 kb on + strand at 72.152 kb on - strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.219 kb on - strand at 72.271 kb on + strand at 72.271 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.432 kb on + strand at 72.444 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.539 kb on - strand at 72.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 69,594 + -1.8 69,595 - -1.0 69,857 - SM_b20059 0.39 -1.0 69,897 + SM_b20059 0.44 -0.6 69,897 + SM_b20059 0.44 +0.8 69,898 - SM_b20059 0.44 -0.5 69,898 - SM_b20059 0.44 +2.0 69,898 - SM_b20059 0.44 -0.4 70,096 - SM_b20059 0.70 -0.6 70,210 + SM_b20059 0.84 -0.8 70,210 + SM_b20059 0.84 +0.5 70,210 + SM_b20059 0.84 -2.2 70,330 - -0.6 71,693 - +0.3 71,755 + +0.5 71,756 - +0.2 71,756 - +0.2 71,792 + -1.3 71,792 + +0.2 71,811 + SM_b22003 0.10 -0.9 71,811 + SM_b22003 0.10 +0.5 71,811 + SM_b22003 0.10 -1.4 71,812 - SM_b22003 0.11 -0.8 71,881 + SM_b22003 0.32 -0.2 71,882 - SM_b22003 0.32 -1.4 71,882 - SM_b22003 0.32 -0.5 71,882 - SM_b22003 0.32 -3.9 71,882 - SM_b22003 0.32 -0.6 71,950 + SM_b22003 0.54 -1.9 71,988 + SM_b22003 0.65 +1.0 71,989 - SM_b22003 0.66 -0.3 72,103 - -2.3 72,103 - +0.2 72,108 + -0.2 72,151 + +1.5 72,152 - -0.1 72,218 + +0.2 72,218 + +0.8 72,218 + +0.1 72,218 + +1.3 72,218 + +1.1 72,219 - -1.0 72,271 + +0.4 72,271 + -0.1 72,432 + -1.9 72,432 + +0.0 72,432 + +2.3 72,432 + +0.2 72,432 + +0.8 72,432 + +1.2 72,444 - +0.8 72,512 - +0.2 72,512 - -0.3 72,512 - +0.4 72,512 - +0.7 72,539 - -0.8 72,539 - -1.6
Or see this region's nucleotide sequence