Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20014 and SM_b20015 are separated by 13 nucleotides SM_b20015 and SM_b20016 overlap by 4 nucleotides SM_b20016 and SM_b20017 overlap by 1 nucleotides
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348
_b20015
SM_b20016: SM_b20016 - sugar ABC transporter permease, at 22,345 to 23,337
_b20016
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
Position (kb) 21
22
23 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.555 kb on + strand, within SM_b20014 at 20.556 kb on - strand, within SM_b20014 at 20.837 kb on - strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 21.150 kb on - strand, within SM_b20014 at 21.237 kb on - strand, within SM_b20014 at 21.421 kb on - strand at 21.421 kb on - strand at 21.612 kb on + strand, within SM_b20015 at 21.612 kb on + strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.613 kb on - strand, within SM_b20015 at 21.649 kb on - strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.741 kb on + strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.742 kb on - strand, within SM_b20015 at 21.771 kb on + strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 21.772 kb on - strand, within SM_b20015 at 22.279 kb on - strand at 22.559 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.655 kb on + strand, within SM_b20016 at 22.656 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 22.794 kb on - strand, within SM_b20016 at 23.127 kb on - strand, within SM_b20016 at 23.160 kb on + strand, within SM_b20016 at 23.161 kb on - strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.162 kb on + strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016 at 23.163 kb on - strand, within SM_b20016
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 20,537 + SM_b20014 0.16 -1.2 20,537 + SM_b20014 0.16 -0.3 20,537 + SM_b20014 0.16 -0.8 20,537 + SM_b20014 0.16 -0.4 20,555 + SM_b20014 0.18 +0.1 20,556 - SM_b20014 0.18 +0.2 20,837 - SM_b20014 0.46 -0.3 20,838 + SM_b20014 0.46 +0.4 20,838 + SM_b20014 0.46 -0.9 20,839 - SM_b20014 0.46 +2.2 20,839 - SM_b20014 0.46 +0.0 21,150 - SM_b20014 0.77 -0.2 21,237 - SM_b20014 0.86 -0.4 21,421 - +0.3 21,421 - +0.2 21,612 + SM_b20015 0.23 +0.4 21,612 + SM_b20015 0.23 -0.9 21,613 - SM_b20015 0.23 -0.6 21,613 - SM_b20015 0.23 +2.2 21,613 - SM_b20015 0.23 +0.6 21,613 - SM_b20015 0.23 -2.6 21,649 - SM_b20015 0.27 +1.6 21,741 + SM_b20015 0.36 +1.1 21,741 + SM_b20015 0.36 -0.1 21,741 + SM_b20015 0.36 +4.0 21,742 - SM_b20015 0.37 -0.3 21,742 - SM_b20015 0.37 -0.9 21,742 - SM_b20015 0.37 -0.5 21,771 + SM_b20015 0.40 +0.4 21,772 - SM_b20015 0.40 +0.7 21,772 - SM_b20015 0.40 -0.9 22,279 - +5.3 22,559 + SM_b20016 0.22 -1.0 22,655 + SM_b20016 0.31 -0.6 22,655 + SM_b20016 0.31 -3.8 22,656 - SM_b20016 0.31 -1.2 22,794 - SM_b20016 0.45 -0.1 22,794 - SM_b20016 0.45 -2.0 22,794 - SM_b20016 0.45 -2.2 23,127 - SM_b20016 0.79 -0.8 23,160 + SM_b20016 0.82 +0.8 23,161 - SM_b20016 0.82 -0.0 23,162 + SM_b20016 0.82 -1.8 23,162 + SM_b20016 0.82 -1.6 23,163 - SM_b20016 0.82 -0.8 23,163 - SM_b20016 0.82 +0.5 23,163 - SM_b20016 0.82 -1.0
Or see this region's nucleotide sequence