Experiment: Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20012 and SM_b20013 are separated by 55 nucleotides SM_b20013 and SM_b20014 are separated by 53 nucleotides
SM_b20012: SM_b20012 - hypothetical protein, at 16,480 to 19,023
_b20012
SM_b20013: SM_b20013 - hypothetical protein, at 19,079 to 20,323
_b20013
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.141 kb on + strand, within SM_b20012 at 18.272 kb on + strand, within SM_b20012 at 18.273 kb on - strand, within SM_b20012 at 18.273 kb on - strand, within SM_b20012 at 18.380 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.663 kb on - strand, within SM_b20012 at 18.663 kb on - strand, within SM_b20012 at 18.737 kb on + strand, within SM_b20012 at 18.737 kb on + strand, within SM_b20012 at 18.738 kb on - strand, within SM_b20012 at 18.770 kb on + strand at 19.081 kb on - strand at 19.081 kb on - strand at 19.110 kb on + strand at 19.111 kb on - strand at 19.111 kb on - strand at 19.226 kb on + strand, within SM_b20013 at 19.227 kb on - strand, within SM_b20013 at 19.270 kb on + strand, within SM_b20013 at 19.271 kb on - strand, within SM_b20013 at 19.272 kb on + strand, within SM_b20013 at 19.382 kb on + strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.470 kb on + strand, within SM_b20013 at 19.471 kb on - strand, within SM_b20013 at 19.569 kb on + strand, within SM_b20013 at 19.612 kb on - strand, within SM_b20013 at 19.911 kb on + strand, within SM_b20013 at 19.912 kb on - strand, within SM_b20013 at 20.068 kb on - strand, within SM_b20013 at 20.209 kb on - strand at 20.269 kb on + strand at 20.382 kb on + strand at 20.382 kb on + strand at 20.383 kb on - strand at 20.383 kb on - strand at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.555 kb on + strand, within SM_b20014 at 20.556 kb on - strand, within SM_b20014 at 20.837 kb on - strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 21.150 kb on - strand, within SM_b20014 at 21.237 kb on - strand, within SM_b20014
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) remove 18,141 + SM_b20012 0.65 -0.2 18,272 + SM_b20012 0.70 -0.3 18,273 - SM_b20012 0.70 -0.2 18,273 - SM_b20012 0.70 +0.1 18,380 + SM_b20012 0.75 -0.6 18,662 + SM_b20012 0.86 -0.1 18,662 + SM_b20012 0.86 -0.3 18,662 + SM_b20012 0.86 -0.5 18,662 + SM_b20012 0.86 +0.7 18,663 - SM_b20012 0.86 +0.5 18,663 - SM_b20012 0.86 -0.6 18,737 + SM_b20012 0.89 +2.7 18,737 + SM_b20012 0.89 -0.5 18,738 - SM_b20012 0.89 -1.3 18,770 + +0.2 19,081 - -1.3 19,081 - -0.4 19,110 + -0.8 19,111 - -0.6 19,111 - -0.4 19,226 + SM_b20013 0.12 -0.5 19,227 - SM_b20013 0.12 -0.8 19,270 + SM_b20013 0.15 +0.4 19,271 - SM_b20013 0.15 +0.2 19,272 + SM_b20013 0.16 -0.6 19,382 + SM_b20013 0.24 -1.7 19,383 - SM_b20013 0.24 +0.7 19,383 - SM_b20013 0.24 +0.0 19,383 - SM_b20013 0.24 +0.9 19,383 - SM_b20013 0.24 -2.8 19,423 - SM_b20013 0.28 -1.3 19,423 - SM_b20013 0.28 +1.7 19,470 + SM_b20013 0.31 -0.2 19,471 - SM_b20013 0.31 -0.3 19,569 + SM_b20013 0.39 +0.1 19,612 - SM_b20013 0.43 -0.1 19,911 + SM_b20013 0.67 +0.8 19,912 - SM_b20013 0.67 -2.1 20,068 - SM_b20013 0.79 -1.0 20,209 - +0.3 20,269 + +0.7 20,382 + +0.8 20,382 + -0.0 20,383 - +0.2 20,383 - +0.7 20,537 + SM_b20014 0.16 -1.2 20,537 + SM_b20014 0.16 -0.3 20,537 + SM_b20014 0.16 -0.8 20,537 + SM_b20014 0.16 -0.4 20,555 + SM_b20014 0.18 +0.1 20,556 - SM_b20014 0.18 +0.2 20,837 - SM_b20014 0.46 -0.3 20,838 + SM_b20014 0.46 +0.4 20,838 + SM_b20014 0.46 -0.9 20,839 - SM_b20014 0.46 +2.2 20,839 - SM_b20014 0.46 +0.0 21,150 - SM_b20014 0.77 -0.2 21,237 - SM_b20014 0.86 -0.4
Or see this region's nucleotide sequence