Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5136

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5134 and Psyr_5135 are separated by 2 nucleotidesPsyr_5135 and Psyr_5136 overlap by 8 nucleotidesPsyr_5136 and Psyr_5137 are separated by 46 nucleotides Psyr_5134: Psyr_5134 - protein translocase subunit yidC, at 6,090,630 to 6,092,321 _5134 Psyr_5135: Psyr_5135 - Protein of unknown function DUF37, at 6,092,324 to 6,092,569 _5135 Psyr_5136: Psyr_5136 - ribonuclease P protein component, at 6,092,562 to 6,092,933 _5136 Psyr_5137: Psyr_5137 - LSU ribosomal protein L34P, at 6,092,980 to 6,093,114 _5137 Position (kb) 6092 6093Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6092.467 kb on - strand, within Psyr_5135at 6092.530 kb on - strand, within Psyr_5135at 6093.238 kb on - strandat 6093.238 kb on - strandat 6093.238 kb on - strandat 6093.238 kb on - strandat 6093.240 kb on - strandat 6093.240 kb on - strandat 6093.293 kb on - strandat 6093.293 kb on - strandat 6093.313 kb on - strandat 6093.313 kb on - strandat 6093.316 kb on + strandat 6093.317 kb on - strandat 6093.317 kb on - strandat 6093.327 kb on + strandat 6093.328 kb on - strandat 6093.328 kb on - strandat 6093.337 kb on - strandat 6093.339 kb on - strandat 6093.345 kb on + strandat 6093.406 kb on + strandat 6093.494 kb on - strandat 6093.517 kb on + strandat 6093.518 kb on - strandat 6093.518 kb on - strandat 6093.553 kb on + strandat 6093.554 kb on - strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.599 kb on + strandat 6093.600 kb on - strandat 6093.601 kb on + strandat 6093.601 kb on + strandat 6093.602 kb on - strandat 6093.602 kb on - strandat 6093.620 kb on + strandat 6093.620 kb on + strandat 6093.620 kb on + strandat 6093.621 kb on - strandat 6093.621 kb on - strandat 6093.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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6,092,467 - Psyr_5135 0.58 -1.2
6,092,530 - Psyr_5135 0.84 -3.4
6,093,238 - +0.2
6,093,238 - +0.4
6,093,238 - +0.8
6,093,238 - +1.0
6,093,240 - -1.6
6,093,240 - +2.4
6,093,293 - +0.4
6,093,293 - +0.8
6,093,313 - +0.4
6,093,313 - -0.5
6,093,316 + -0.6
6,093,317 - -0.1
6,093,317 - +2.0
6,093,327 + +3.2
6,093,328 - +2.7
6,093,328 - +2.0
6,093,337 - +0.8
6,093,339 - +0.0
6,093,345 + +1.4
6,093,406 + +1.4
6,093,494 - +1.6
6,093,517 + +0.1
6,093,518 - -1.8
6,093,518 - -0.4
6,093,553 + -0.0
6,093,554 - -0.9
6,093,599 + -1.6
6,093,599 + +0.0
6,093,599 + +0.4
6,093,599 + +1.0
6,093,599 + -1.9
6,093,599 + -1.2
6,093,599 + -0.4
6,093,600 - +1.4
6,093,601 + -1.0
6,093,601 + +1.1
6,093,602 - -0.1
6,093,602 - +0.7
6,093,620 + -0.4
6,093,620 + -0.5
6,093,620 + +0.4
6,093,621 - -0.6
6,093,621 - -0.8
6,093,621 - -0.2

Or see this region's nucleotide sequence