Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5134 and Psyr_5135 are separated by 2 nucleotides Psyr_5135 and Psyr_5136 overlap by 8 nucleotides Psyr_5136 and Psyr_5137 are separated by 46 nucleotides
Psyr_5134: Psyr_5134 - protein translocase subunit yidC, at 6,090,630 to 6,092,321
_5134
Psyr_5135: Psyr_5135 - Protein of unknown function DUF37, at 6,092,324 to 6,092,569
_5135
Psyr_5136: Psyr_5136 - ribonuclease P protein component, at 6,092,562 to 6,092,933
_5136
Psyr_5137: Psyr_5137 - LSU ribosomal protein L34P, at 6,092,980 to 6,093,114
_5137
Position (kb)
6092
6093 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6092.467 kb on - strand, within Psyr_5135 at 6092.530 kb on - strand, within Psyr_5135 at 6093.238 kb on - strand at 6093.238 kb on - strand at 6093.238 kb on - strand at 6093.238 kb on - strand at 6093.240 kb on - strand at 6093.240 kb on - strand at 6093.293 kb on - strand at 6093.293 kb on - strand at 6093.313 kb on - strand at 6093.313 kb on - strand at 6093.316 kb on + strand at 6093.317 kb on - strand at 6093.317 kb on - strand at 6093.327 kb on + strand at 6093.328 kb on - strand at 6093.328 kb on - strand at 6093.337 kb on - strand at 6093.339 kb on - strand at 6093.345 kb on + strand at 6093.406 kb on + strand at 6093.494 kb on - strand at 6093.517 kb on + strand at 6093.518 kb on - strand at 6093.518 kb on - strand at 6093.553 kb on + strand at 6093.554 kb on - strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.599 kb on + strand at 6093.600 kb on - strand at 6093.601 kb on + strand at 6093.601 kb on + strand at 6093.602 kb on - strand at 6093.602 kb on - strand at 6093.620 kb on + strand at 6093.620 kb on + strand at 6093.620 kb on + strand at 6093.621 kb on - strand at 6093.621 kb on - strand at 6093.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 6,092,467 - Psyr_5135 0.58 -1.2 6,092,530 - Psyr_5135 0.84 -3.4 6,093,238 - +0.2 6,093,238 - +0.4 6,093,238 - +0.8 6,093,238 - +1.0 6,093,240 - -1.6 6,093,240 - +2.4 6,093,293 - +0.4 6,093,293 - +0.8 6,093,313 - +0.4 6,093,313 - -0.5 6,093,316 + -0.6 6,093,317 - -0.1 6,093,317 - +2.0 6,093,327 + +3.2 6,093,328 - +2.7 6,093,328 - +2.0 6,093,337 - +0.8 6,093,339 - +0.0 6,093,345 + +1.4 6,093,406 + +1.4 6,093,494 - +1.6 6,093,517 + +0.1 6,093,518 - -1.8 6,093,518 - -0.4 6,093,553 + -0.0 6,093,554 - -0.9 6,093,599 + -1.6 6,093,599 + +0.0 6,093,599 + +0.4 6,093,599 + +1.0 6,093,599 + -1.9 6,093,599 + -1.2 6,093,599 + -0.4 6,093,600 - +1.4 6,093,601 + -1.0 6,093,601 + +1.1 6,093,602 - -0.1 6,093,602 - +0.7 6,093,620 + -0.4 6,093,620 + -0.5 6,093,620 + +0.4 6,093,621 - -0.6 6,093,621 - -0.8 6,093,621 - -0.2
Or see this region's nucleotide sequence