Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4060

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
4,841,374	+				-0.2
4,841,374	+				+1.5
4,841,395	+				-1.1
4,841,395	+				+0.1
4,841,396	-				-1.5
4,842,063	+				-1.7
4,842,064	-				-0.3
4,842,188	+				-0.9
4,842,188	+				-0.1
4,842,189	-				+1.2
4,842,197	+				-0.2
4,842,197	+				+0.8
4,842,197	+				-0.5
4,842,197	+				+0.6
4,842,197	+				+0.8
4,842,198	-				-0.5
4,842,198	-				+0.1
4,842,214	-				-0.6
4,842,214	-				-0.1
4,842,234	+				-0.2
4,842,234	+				+0.5
4,842,234	+				-0.3
4,842,234	+				+0.6
4,842,234	+				-0.9
4,842,234	+				+0.7
4,842,234	+				+0.6
4,842,234	+				+0.3
4,842,235	-				+1.3
4,842,235	-				-0.6
4,842,235	-				+1.7
4,842,235	-				-1.3
4,842,235	-				-0.2
4,842,235	-				-0.9
4,842,235	-				+0.1
4,842,235	-				-2.9
4,842,243	-				+0.3
4,842,249	+				+0.3
4,842,249	+				-1.9
4,842,249	+				+1.3
4,842,249	+				-0.0
4,842,249	+				-0.3
4,842,249	+				-0.0
4,842,249	+				+0.9
4,842,250	-				-0.7
4,842,250	-				+2.1
4,842,250	-				-0.7
4,842,257	+				-0.3
4,842,258	-				+0.8
4,842,280	+				+1.1
4,842,280	+				+0.7
4,842,280	+				+0.1
4,842,281	-				-0.7
4,842,281	-				-2.2
4,842,408	+				+0.5
4,842,409	-				+0.6
4,842,427	+				-1.8
4,842,427	+				-0.2
4,842,427	+				+1.2
4,842,551	+				+1.7
4,842,552	-				-2.0
4,842,552	-				-1.0
4,842,630	-		Psyr_4060	0.12	+0.1
4,842,705	+		Psyr_4060	0.16	-0.6
4,842,705	+		Psyr_4060	0.16	+0.1
4,842,845	+		Psyr_4060	0.22	-0.7
4,842,849	-		Psyr_4060	0.22	+0.4
4,842,884	+		Psyr_4060	0.24	-0.4
4,842,965	+		Psyr_4060	0.28	+0.1
4,842,966	-		Psyr_4060	0.28	+0.6
4,842,966	-		Psyr_4060	0.28	-0.1
4,842,966	-		Psyr_4060	0.28	-1.2
4,842,966	-		Psyr_4060	0.28	+0.8
4,842,966	-		Psyr_4060	0.28	+0.1
4,842,974	+		Psyr_4060	0.28	+0.3
4,842,974	+		Psyr_4060	0.28	-1.5
4,842,975	-		Psyr_4060	0.28	+0.1
4,843,148	+		Psyr_4060	0.37	-0.3
4,843,148	+		Psyr_4060	0.37	+1.1
4,843,148	+		Psyr_4060	0.37	+0.9
4,843,148	+		Psyr_4060	0.37	-1.7
4,843,148	+		Psyr_4060	0.37	-0.6
4,843,148	+		Psyr_4060	0.37	+1.3
4,843,148	+		Psyr_4060	0.37	+1.7
4,843,148	+		Psyr_4060	0.37	+0.2
4,843,148	+		Psyr_4060	0.37	+0.4
4,843,148	+		Psyr_4060	0.37	+1.1
4,843,149	-		Psyr_4060	0.37	-0.4
4,843,149	-		Psyr_4060	0.37	+0.1
4,843,149	-		Psyr_4060	0.37	-0.2
4,843,149	-		Psyr_4060	0.37	-0.3
4,843,149	-		Psyr_4060	0.37	-0.5
4,843,149	-		Psyr_4060	0.37	-0.3
4,843,149	-		Psyr_4060	0.37	-1.1
4,843,149	-		Psyr_4060	0.37	+1.4
4,843,149	-		Psyr_4060	0.37	+0.7
4,843,149	-		Psyr_4060	0.37	+0.6
4,843,149	-		Psyr_4060	0.37	+1.5
4,843,193	+		Psyr_4060	0.39	-0.6
4,843,194	-		Psyr_4060	0.39	-0.3
4,843,341	-		Psyr_4060	0.46	-0.2
4,843,359	+		Psyr_4060	0.47	+1.2
4,843,359	+		Psyr_4060	0.47	+0.4
4,843,359	+		Psyr_4060	0.47	+0.9
4,843,359	+		Psyr_4060	0.47	-0.0
4,843,360	-		Psyr_4060	0.47	-0.6
4,843,360	-		Psyr_4060	0.47	+0.9
4,843,360	-		Psyr_4060	0.47	-0.8
4,843,398	+		Psyr_4060	0.48	+0.1
4,843,398	+		Psyr_4060	0.48	-2.7
4,843,670	+		Psyr_4060	0.61	-1.7
4,843,670	+		Psyr_4060	0.61	-0.1
4,843,670	+		Psyr_4060	0.61	+2.1
4,843,671	-		Psyr_4060	0.61	+0.1
4,843,671	-		Psyr_4060	0.61	+1.9
4,843,671	-		Psyr_4060	0.61	-1.4
4,843,671	-		Psyr_4060	0.61	+0.1
4,843,671	-		Psyr_4060	0.61	-0.9
4,843,671	-		Psyr_4060	0.61	+0.3
4,843,671	-		Psyr_4060	0.61	+0.1
4,843,671	-		Psyr_4060	0.61	+0.1
4,843,755	-		Psyr_4060	0.65	+0.2
4,843,755	-		Psyr_4060	0.65	+0.3
4,843,755	-		Psyr_4060	0.65	-0.7
4,843,755	-		Psyr_4060	0.65	-0.6
4,843,763	+		Psyr_4060	0.66	+0.2
4,843,764	-		Psyr_4060	0.66	+0.1
4,843,764	-		Psyr_4060	0.66	-0.8
4,843,860	+		Psyr_4060	0.70	-0.5
4,843,860	+		Psyr_4060	0.70	-2.6
4,843,860	+		Psyr_4060	0.70	+0.5
4,843,860	+		Psyr_4060	0.70	-1.5
4,843,860	+		Psyr_4060	0.70	+0.7
4,843,860	+		Psyr_4060	0.70	+0.1
4,843,860	+		Psyr_4060	0.70	+0.1
4,843,860	+		Psyr_4060	0.70	+0.4
4,843,860	+		Psyr_4060	0.70	-1.9
4,843,860	+		Psyr_4060	0.70	-1.1
4,843,860	+		Psyr_4060	0.70	+0.7
4,843,860	+		Psyr_4060	0.70	+0.1
4,843,861	-		Psyr_4060	0.70	+0.9
4,843,861	-		Psyr_4060	0.70	-0.7
4,843,861	-		Psyr_4060	0.70	+0.7
4,844,052	-		Psyr_4060	0.79	+1.4
4,844,110	+		Psyr_4060	0.82	-0.3
4,844,110	+		Psyr_4060	0.82	-0.9
4,844,110	+		Psyr_4060	0.82	+2.2
4,844,110	+		Psyr_4060	0.82	+0.4
4,844,111	-		Psyr_4060	0.82	-0.5
4,844,111	-		Psyr_4060	0.82	-0.3
4,844,111	-		Psyr_4060	0.82	-0.7
4,844,111	-		Psyr_4060	0.82	-2.2
4,844,111	-		Psyr_4060	0.82	+0.1
4,844,205	-		Psyr_4060	0.86	+0.4
4,844,284	+				-0.3
4,844,284	+				+0.1
4,844,284	+				-0.1
4,844,285	-				+0.5
4,844,285	-				+0.2
4,844,285	-				-0.4
4,844,285	-				+0.8
4,844,287	+				-0.1
4,844,372	+				+0.8
4,844,372	+				-0.8
4,844,372	+				+0.6
4,844,372	+				+1.1
4,844,372	+				-0.3
4,844,372	+				+2.7
4,844,372	+				-0.0
4,844,372	+				-0.8
4,844,373	-				+1.6
4,844,373	-				+1.1
4,844,373	-				+0.7
4,844,373	-				+0.3
4,844,373	-				+0.6
4,844,373	-				+0.7
4,844,373	-				+0.0
4,844,373	-				-0.2
4,844,373	-				-1.5
4,844,408	+				-0.8
4,844,409	-				+0.7
4,844,415	-				+0.5
4,844,451	-				+0.8
4,844,451	-				+1.0
4,844,451	-				+0.5
4,844,451	-				+0.6
4,844,540	+				+0.3
4,844,540	+				+0.6
4,844,540	+				-0.1
4,844,540	+				-1.5
4,844,540	+				-1.2
4,844,541	-				-0.7
4,844,541	-				-0.5
4,844,680	+				+0.1
4,844,681	-				-2.2
4,844,681	-				-0.6
4,844,681	-				-0.5
4,844,699	-				-1.9
4,844,716	+				-1.2
4,844,717	-				+2.1
4,844,894	+				-0.9
4,844,894	+		Psyr_4061	0.16	+0.5
4,844,895	-		Psyr_4061	0.16	+0.7
4,844,895	-		Psyr_4061	0.16	+0.8
4,844,895	-		Psyr_4061	0.16	+2.7
4,844,895	-		Psyr_4061	0.16	-1.6
4,844,895	-		Psyr_4061	0.16	+0.1
4,845,039	-		Psyr_4061	0.27	-1.2
4,845,039	-		Psyr_4061	0.27	-1.7
4,845,039	-		Psyr_4061	0.27	+3.3
4,845,134	+		Psyr_4061	0.34	+0.8
4,845,134	+		Psyr_4061	0.34	-0.3
4,845,134	+		Psyr_4061	0.34	-1.9
4,845,134	+		Psyr_4061	0.34	+0.1
4,845,149	+		Psyr_4061	0.35	+0.3
4,845,440	+		Psyr_4061	0.56	-0.2
4,845,441	-		Psyr_4061	0.56	-0.5