Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3999

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
4,762,367	-		Psyr_3998	0.51	+0.0
4,762,516	-		Psyr_3998	0.61	+0.2
4,762,633	+		Psyr_3998	0.68	-0.7
4,762,633	+		Psyr_3998	0.68	+0.0
4,762,634	-		Psyr_3998	0.68	-0.5
4,762,693	+		Psyr_3998	0.72	-2.0
4,762,694	-		Psyr_3998	0.72	-0.7
4,762,764	+		Psyr_3998	0.77	-0.4
4,762,765	-		Psyr_3998	0.77	+0.5
4,762,765	-		Psyr_3998	0.77	+1.3
4,762,772	+		Psyr_3998	0.77	-1.0
4,762,772	+		Psyr_3998	0.77	+0.2
4,762,773	-		Psyr_3998	0.77	-0.2
4,762,829	+		Psyr_3998	0.81	-0.6
4,762,945	+		Psyr_3998	0.89	-2.6
4,762,991	-				-0.1
4,762,991	-				+0.8
4,763,036	-				+0.6
4,763,107	-				-0.1
4,763,205	+				-1.6
4,763,206	-				-0.2
4,763,206	-				-2.0
4,763,243	+				-1.9
4,763,243	+				-2.0
4,763,244	-				+0.0
4,763,278	+				+0.7
4,763,278	+				+1.2
4,763,278	+				+0.0
4,763,278	+				+2.6
4,763,278	+				+0.4
4,763,278	+				+0.4
4,763,278	+				+1.3
4,763,278	+				+1.8
4,763,278	+				+1.9
4,763,278	+				+0.0
4,763,278	+				+1.5
4,763,279	-				-2.8
4,763,279	-				-3.8
4,763,279	-				-1.7
4,763,279	-				-1.6
4,763,283	-				-1.0
4,763,283	-				-3.2
4,763,318	-				-2.0
4,763,455	-				-1.0
4,763,455	-				-1.7
4,763,463	+				-3.4
4,763,470	-		Psyr_3999	0.10	-2.7
4,763,487	+		Psyr_3999	0.11	-1.0
4,763,488	-		Psyr_3999	0.11	-1.6
4,763,579	+		Psyr_3999	0.18	-2.2
4,763,580	-		Psyr_3999	0.18	-2.6
4,763,605	-		Psyr_3999	0.20	-2.3
4,763,605	-		Psyr_3999	0.20	-1.0
4,763,613	+		Psyr_3999	0.21	-1.4
4,763,614	-		Psyr_3999	0.21	-2.6
4,763,614	-		Psyr_3999	0.21	-0.8
4,763,614	-		Psyr_3999	0.21	-0.6
4,763,614	-		Psyr_3999	0.21	-0.8
4,763,694	+		Psyr_3999	0.27	-2.3
4,763,790	+		Psyr_3999	0.34	-2.8
4,763,790	+		Psyr_3999	0.34	-3.0
4,763,791	-		Psyr_3999	0.34	-3.0
4,763,791	-		Psyr_3999	0.34	-0.3
4,763,791	-		Psyr_3999	0.34	-3.2
4,763,791	-		Psyr_3999	0.34	-1.6
4,763,791	-		Psyr_3999	0.34	-0.4
4,763,925	+		Psyr_3999	0.44	-2.6
4,763,926	-				+0.0
4,763,926	-		Psyr_3999	0.44	-2.6
4,763,926	-		Psyr_3999	0.44	-2.8
4,763,926	-		Psyr_3999	0.44	-0.6
4,763,942	+		Psyr_3999	0.46	-3.2
4,763,943	-		Psyr_3999	0.46	-2.4
4,764,133	-		Psyr_3999	0.60	-1.6
4,764,133	-		Psyr_3999	0.60	-2.8
4,764,138	+		Psyr_3999	0.60	-2.0
4,764,138	+		Psyr_3999	0.60	-3.2
4,764,138	+		Psyr_3999	0.60	-4.2
4,764,138	+		Psyr_3999	0.60	-1.6
4,764,138	+		Psyr_3999	0.60	-0.7
4,764,139	-		Psyr_3999	0.60	-3.9
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,139	-		Psyr_3999	0.60	-2.6
4,764,139	-		Psyr_3999	0.60	-3.0
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,139	-		Psyr_3999	0.60	-2.3
4,764,147	+		Psyr_3999	0.61	-2.8
4,764,147	+		Psyr_3999	0.61	+0.0
4,764,147	+		Psyr_3999	0.61	-2.6
4,764,147	+		Psyr_3999	0.61	-1.6
4,764,147	+		Psyr_3999	0.61	-2.3
4,764,147	+		Psyr_3999	0.61	-3.8
4,764,147	+		Psyr_3999	0.61	-3.6
4,764,147	+		Psyr_3999	0.61	-3.9
4,764,147	+		Psyr_3999	0.61	-2.3
4,764,147	+		Psyr_3999	0.61	-2.1
4,764,147	+		Psyr_3999	0.61	-2.6
4,764,147	+		Psyr_3999	0.61	+0.0
4,764,147	+		Psyr_3999	0.61	-1.6
4,764,147	+		Psyr_3999	0.61	-2.9
4,764,147	+		Psyr_3999	0.61	-1.9
4,764,148	-		Psyr_3999	0.61	-1.0
4,764,148	-		Psyr_3999	0.61	-2.0
4,764,148	-		Psyr_3999	0.61	-1.6
4,764,148	-		Psyr_3999	0.61	-0.6
4,764,148	-		Psyr_3999	0.61	-1.0
4,764,148	-		Psyr_3999	0.61	-2.8
4,764,148	-		Psyr_3999	0.61	-2.6
4,764,148	-		Psyr_3999	0.61	-2.0
4,764,148	-		Psyr_3999	0.61	-2.0
4,764,148	-		Psyr_3999	0.61	-1.4
4,764,148	-		Psyr_3999	0.61	-1.0
4,764,148	-		Psyr_3999	0.61	-1.6
4,764,148	-		Psyr_3999	0.61	-2.8
4,764,148	-		Psyr_3999	0.61	-2.3
4,764,148	-		Psyr_3999	0.61	-4.0
4,764,148	-		Psyr_3999	0.61	-1.0
4,764,148	-		Psyr_3999	0.61	-4.5
4,764,148	-		Psyr_3999	0.61	-3.9
4,764,148	-		Psyr_3999	0.61	-2.4
4,764,148	-		Psyr_3999	0.61	-2.6
4,764,148	-		Psyr_3999	0.61	-1.0
4,764,148	-		Psyr_3999	0.61	-2.6
4,764,148	-		Psyr_3999	0.61	-2.8
4,764,149	+		Psyr_3999	0.61	-2.0
4,764,149	+		Psyr_3999	0.61	-2.6
4,764,149	+		Psyr_3999	0.61	-2.3
4,764,149	+		Psyr_3999	0.61	-2.8
4,764,149	+		Psyr_3999	0.61	-2.6
4,764,149	+		Psyr_3999	0.61	-2.4
4,764,149	+		Psyr_3999	0.61	+0.0
4,764,149	+		Psyr_3999	0.61	+0.0
4,764,149	+		Psyr_3999	0.61	-1.0
4,764,150	-		Psyr_3999	0.61	-2.6
4,764,150	-		Psyr_3999	0.61	-3.9
4,764,150	-		Psyr_3999	0.61	-1.8
4,764,150	-		Psyr_3999	0.61	-3.8
4,764,150	-		Psyr_3999	0.61	-3.6
4,764,150	-		Psyr_3999	0.61	-3.2
4,764,150	-		Psyr_3999	0.61	+0.0
4,764,150	-		Psyr_3999	0.61	-1.3
4,764,150	-		Psyr_3999	0.61	-3.6
4,764,150	-		Psyr_3999	0.61	-1.7
4,764,159	+		Psyr_3999	0.62	-3.6
4,764,159	+				-1.0
4,764,160	-		Psyr_3999	0.62	-0.7
4,764,160	-		Psyr_3999	0.62	-2.0
4,764,160	-		Psyr_3999	0.62	-1.8
4,764,160	-		Psyr_3999	0.62	+0.0
4,764,160	-		Psyr_3999	0.62	-1.2
4,764,305	-		Psyr_3999	0.73	-2.1
4,764,321	-		Psyr_3999	0.74	-2.6
4,764,348	-		Psyr_3999	0.76	+0.0
4,764,348	-		Psyr_3999	0.76	-3.7
4,764,348	-		Psyr_3999	0.76	-3.6
4,764,348	-		Psyr_3999	0.76	-2.6
4,764,413	+		Psyr_3999	0.81	-3.9
4,764,413	+		Psyr_3999	0.81	-2.8
4,764,414	-		Psyr_3999	0.81	-4.0
4,764,414	-		Psyr_3999	0.81	-2.4
4,764,414	-		Psyr_3999	0.81	-2.8
4,764,414	-		Psyr_3999	0.81	-2.0
4,764,525	+		Psyr_3999	0.90	+0.0
4,764,525	+		Psyr_3999	0.90	-3.8
4,764,525	+		Psyr_3999	0.90	-2.6
4,764,526	-		Psyr_3999	0.90	-3.3
4,764,570	+				+0.0
4,764,570	+				-2.3
4,764,571	-				+0.3
4,764,571	-				-2.6
4,764,576	+				-2.3
4,764,576	+				-3.0
4,764,576	+				-2.2
4,764,577	-				+0.1
4,764,577	-				-2.0
4,764,577	-				-2.8
4,764,591	-				-1.6
4,764,612	+				-1.8
4,764,612	+				-0.4
4,764,612	+				-1.6
4,764,612	+				-1.0
4,764,612	+				-2.6
4,764,612	+				+0.6
4,764,612	+				-0.6
4,764,612	+				-1.2
4,764,612	+				-0.7
4,764,612	+				+0.0
4,764,613	-				-3.0
4,764,613	-				-1.6
4,764,613	-				-0.6
4,764,613	-				+0.7
4,764,613	-				-1.6
4,764,613	-				-2.7
4,764,613	-				-3.0
4,764,613	-				-1.3
4,764,613	-				-1.4
4,764,613	-				-1.3
4,764,613	-				-2.0
4,764,613	-				-3.4
4,764,613	-				-2.8
4,764,613	-				-2.8
4,764,613	-				-1.6
4,764,706	+				-0.9
4,764,706	+				-3.2
4,764,707	-				-1.0
4,764,707	-				+0.0
4,764,707	-				-1.2
4,764,707	-				-2.0
4,764,708	+				-0.4
4,764,708	+				-1.8
4,764,708	+				-2.0
4,764,708	+				-1.7
4,764,708	+				-2.0
4,764,708	+				-2.6
4,764,708	+				-2.3
4,764,708	+				-2.6
4,764,708	+				-3.9
4,764,708	+				-1.0
4,764,709	-				-0.6
4,764,709	-				-1.7
4,764,709	-				-0.6
4,764,709	-				-1.2
4,764,709	-				-1.2
4,764,709	-				-2.0
4,764,709	-				+0.8
4,764,709	-				-2.7
4,764,709	-				-3.6
4,764,709	-				-2.6
4,764,710	+				-2.2
4,764,710	+				-2.3
4,764,710	+				-1.0
4,764,710	+				-1.9
4,764,710	+				-1.0
4,764,710	+				-2.6
4,764,710	+				-1.2
4,764,710	+				-2.3
4,764,710	+				-2.2
4,764,710	+				-2.6
4,764,710	+				-1.6
4,764,710	+				-1.0
4,764,711	-				-1.7
4,764,711	-				-1.3
4,764,711	-				-1.0
4,764,711	-				-0.7
4,764,711	-				-3.2
4,764,711	-				-1.2
4,764,711	-				-1.6
4,764,711	-				-1.6
4,764,711	-				-2.8
4,764,711	-				-1.4
4,764,711	-				-1.3
4,764,711	-				-3.4
4,764,711	-				-1.3
4,764,766	+				-1.2
4,764,766	+				+2.3
4,764,767	-				-1.0
4,764,774	+				+0.9
4,764,775	-				+0.0
4,764,848	+				+0.0
4,764,848	+				-0.5
4,764,848	+				-0.2
4,764,848	+				+1.0
4,764,848	+				-0.2
4,764,848	+				+0.2
4,764,848	+				+0.7
4,764,848	+				+0.3
4,764,849	-				-0.4
4,764,849	-				+0.0
4,764,849	-				-0.3
4,764,849	-				-2.0
4,764,849	-				-0.7
4,764,849	-				-1.3
4,764,849	-				+0.4
4,764,849	-				-1.2
4,764,851	-				-0.7
4,764,896	+		Psyr_4000	0.25	-0.7
4,764,897	-		Psyr_4000	0.25	+0.0
4,764,908	+		Psyr_4000	0.29	-1.0
4,764,909	-		Psyr_4000	0.30	-0.3
4,764,909	-		Psyr_4000	0.30	-0.6
4,764,926	+		Psyr_4000	0.36	-0.6
4,764,926	+		Psyr_4000	0.36	-0.3
4,764,926	+		Psyr_4000	0.36	-0.3
4,764,926	+		Psyr_4000	0.36	-1.6
4,764,926	+		Psyr_4000	0.36	+1.6
4,764,927	-		Psyr_4000	0.37	+0.4
4,764,927	-		Psyr_4000	0.37	-1.0
4,764,927	-		Psyr_4000	0.37	-0.5
4,764,927	-		Psyr_4000	0.37	-3.4
4,764,927	-		Psyr_4000	0.37	-0.2
4,764,927	-		Psyr_4000	0.37	-0.6
4,764,953	+		Psyr_4000	0.47	-0.7
4,765,028	-		Psyr_4000	0.76	-1.8
4,765,090	+				+0.0
4,765,138	+				-0.3
4,765,139	-				+1.6
4,765,169	+				+1.5
4,765,169	+				-3.0
4,765,170	-				-1.6
4,765,172	+				+0.0
4,765,173	-				-0.6
4,765,173	-				-0.3
4,765,173	-				-1.6
4,765,181	-				-2.0
4,765,183	+				-1.0
4,765,183	+				+0.9
4,765,198	+				+1.0
4,765,198	+				+0.0
4,765,198	+				-2.6
4,765,213	-				-0.5
4,765,287	+		Psyr_4001	0.10	+0.6
4,765,288	-		Psyr_4001	0.10	-0.4
4,765,390	-		Psyr_4001	0.42	-1.3
4,765,550	+				-0.1