Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3991

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
4,748,985	+				-0.9
4,748,986	-				+1.0
4,749,003	+				-0.4
4,749,003	+				-0.5
4,749,003	+				-1.5
4,749,004	-				-1.1
4,749,004	-				+0.7
4,749,004	-				-0.8
4,749,113	+		Psyr_3990	0.20	-0.3
4,749,113	+		Psyr_3990	0.20	+1.2
4,749,113	+		Psyr_3990	0.20	+0.3
4,749,113	+		Psyr_3990	0.20	-0.7
4,749,113	+		Psyr_3990	0.20	+0.9
4,749,114	-		Psyr_3990	0.20	-1.5
4,749,114	-		Psyr_3990	0.20	-1.0
4,749,114	-		Psyr_3990	0.20	-1.2
4,749,114	-		Psyr_3990	0.20	-1.0
4,749,114	-		Psyr_3990	0.20	+0.7
4,749,114	-		Psyr_3990	0.20	+0.6
4,749,114	-		Psyr_3990	0.20	-0.7
4,749,303	+		Psyr_3990	0.39	-0.3
4,749,304	-		Psyr_3990	0.39	+0.0
4,749,315	-		Psyr_3990	0.40	+0.7
4,749,315	-		Psyr_3990	0.40	-0.4
4,749,350	+		Psyr_3990	0.44	-0.4
4,749,350	+		Psyr_3990	0.44	+0.7
4,749,350	+		Psyr_3990	0.44	-1.6
4,749,350	+		Psyr_3990	0.44	+0.8
4,749,350	+		Psyr_3990	0.44	-1.3
4,749,350	+		Psyr_3990	0.44	+0.8
4,749,350	+		Psyr_3990	0.44	-1.5
4,749,350	+		Psyr_3990	0.44	-0.8
4,749,350	+		Psyr_3990	0.44	+0.0
4,749,350	+		Psyr_3990	0.44	+0.0
4,749,350	+		Psyr_3990	0.44	-2.6
4,749,351	-		Psyr_3990	0.44	-0.8
4,749,351	-		Psyr_3990	0.44	+1.1
4,749,351	-		Psyr_3990	0.44	+0.7
4,749,351	-		Psyr_3990	0.44	-0.7
4,749,351	-		Psyr_3990	0.44	+0.0
4,749,351	-		Psyr_3990	0.44	+1.7
4,749,351	-		Psyr_3990	0.44	-0.7
4,749,351	-		Psyr_3990	0.44	-1.0
4,749,351	-		Psyr_3990	0.44	-1.2
4,749,351	-		Psyr_3990	0.44	-1.3
4,749,351	-		Psyr_3990	0.44	+0.3
4,749,447	+		Psyr_3990	0.53	-2.4
4,749,447	+		Psyr_3990	0.53	-1.1
4,749,448	-		Psyr_3990	0.53	+0.7
4,749,457	+		Psyr_3990	0.54	-0.7
4,749,457	+		Psyr_3990	0.54	+0.0
4,749,457	+		Psyr_3990	0.54	+0.8
4,749,466	+		Psyr_3990	0.55	+1.6
4,749,467	-		Psyr_3990	0.55	-0.6
4,749,501	+		Psyr_3990	0.59	-1.4
4,749,502	-		Psyr_3990	0.59	+0.7
4,749,613	+		Psyr_3990	0.70	+0.0
4,749,613	+		Psyr_3990	0.70	+0.3
4,749,613	+		Psyr_3990	0.70	-2.0
4,749,613	+		Psyr_3990	0.70	+1.0
4,749,613	+		Psyr_3990	0.70	-2.0
4,749,613	+		Psyr_3990	0.70	-0.5
4,749,613	+		Psyr_3990	0.70	+0.7
4,749,614	-		Psyr_3990	0.70	+0.0
4,749,614	-		Psyr_3990	0.70	-1.0
4,749,614	-		Psyr_3990	0.70	+0.9
4,749,655	+		Psyr_3990	0.74	+1.0
4,749,656	-		Psyr_3990	0.74	+2.2
4,749,658	-		Psyr_3990	0.74	-1.0
4,749,803	-		Psyr_3990	0.89	-0.7
4,749,803	-		Psyr_3990	0.89	+1.0
4,749,803	-		Psyr_3990	0.89	-1.0
4,749,803	-		Psyr_3990	0.89	+0.2
4,749,803	-		Psyr_3990	0.89	-0.7
4,749,880	+				-1.3
4,749,880	+				-0.4
4,749,880	+				+0.4
4,749,881	-				-2.0
4,749,881	-				+0.3
4,749,884	+				+0.1
4,749,885	-				+0.0
4,749,885	-				-0.3
4,749,885	-				+0.5
4,749,885	-				+0.0
4,749,885	-				+0.0
4,749,885	-				-2.0
4,749,885	-				+0.7
4,749,895	+				-0.7
4,749,895	+				+0.5
4,749,934	+				-2.3
4,749,934	+				-1.9
4,749,934	+				+0.3
4,749,934	+				-2.6
4,749,935	-				+0.4
4,749,935	-				-1.3
4,749,935	-				+0.0
4,749,936	+				-0.3
4,749,936	+				+0.6
4,749,936	+				+0.3
4,749,936	+				-0.2
4,749,936	+				-1.2
4,749,936	+				+0.7
4,749,937	-				+1.0
4,749,937	-				+1.4
4,749,937	-				+1.3
4,749,937	-				+0.3
4,750,032	+				-0.1
4,750,032	+				-0.6
4,750,032	+				+1.2
4,750,032	+				-0.3
4,750,032	+				-0.3
4,750,032	+				+0.0
4,750,032	+				-0.2
4,750,032	+				-0.4
4,750,032	+				+1.7
4,750,032	+				-1.3
4,750,033	-				-0.2
4,750,033	-				-1.0
4,750,033	-				-1.6
4,750,033	-				+1.0
4,750,067	+		Psyr_3991	0.14	-1.2
4,750,068	-		Psyr_3991	0.15	-0.1
4,750,068	-		Psyr_3991	0.15	+0.2
4,750,068	-		Psyr_3991	0.15	-2.0
4,750,192	+		Psyr_3991	0.35	+1.0
4,750,192	+		Psyr_3991	0.35	-1.3
4,750,192	+		Psyr_3991	0.35	+0.2
4,750,193	-		Psyr_3991	0.35	-0.3
4,750,193	-		Psyr_3991	0.35	+2.8
4,750,361	+		Psyr_3991	0.62	-2.0
4,750,362	-		Psyr_3991	0.62	+0.3
4,750,370	+		Psyr_3991	0.63	-0.2
4,750,370	+		Psyr_3991	0.63	+0.5
4,750,371	-		Psyr_3991	0.64	-1.2
4,750,371	-		Psyr_3991	0.64	+0.0
4,750,420	+		Psyr_3991	0.72	-1.6
4,750,420	+		Psyr_3991	0.72	+0.0
4,750,421	-		Psyr_3991	0.72	-2.0
4,750,421	-		Psyr_3991	0.72	-2.6
4,750,421	-		Psyr_3991	0.72	+0.0
4,750,421	-		Psyr_3991	0.72	-2.0
4,750,421	-		Psyr_3991	0.72	-0.6
4,750,421	-		Psyr_3991	0.72	+0.7
4,750,477	+		Psyr_3991	0.81	+0.9
4,750,477	+		Psyr_3991	0.81	-2.1
4,750,477	+		Psyr_3991	0.81	-1.0
4,750,477	+		Psyr_3991	0.81	-0.4
4,750,477	+		Psyr_3991	0.81	-0.2
4,750,477	+		Psyr_3991	0.81	+0.3
4,750,477	+		Psyr_3991	0.81	+1.8
4,750,477	+		Psyr_3991	0.81	-2.2
4,750,477	+		Psyr_3991	0.81	-1.0
4,750,477	+		Psyr_3991	0.81	-1.4
4,750,478	-		Psyr_3991	0.81	-0.4
4,750,478	-		Psyr_3991	0.81	-2.3
4,750,478	-		Psyr_3991	0.81	-1.7
4,750,478	-		Psyr_3991	0.81	+0.7
4,750,478	-		Psyr_3991	0.81	-0.7
4,750,478	-		Psyr_3991	0.81	-1.0
4,750,478	-		Psyr_3991	0.81	+0.0
4,750,483	+		Psyr_3991	0.82	-0.4
4,750,483	+		Psyr_3991	0.82	-0.1
4,750,483	+		Psyr_3991	0.82	-3.0
4,750,483	+		Psyr_3991	0.82	+1.1
4,750,484	-		Psyr_3991	0.82	-0.9
4,750,484	-		Psyr_3991	0.82	-0.4
4,750,484	-		Psyr_3991	0.82	+0.2
4,750,588	-				-0.7
4,750,726	+		Psyr_3992	0.15	+0.5
4,750,726	+		Psyr_3992	0.15	-0.5
4,750,726	+		Psyr_3992	0.15	-1.6
4,750,726	+		Psyr_3992	0.15	-1.9
4,750,727	-		Psyr_3992	0.15	-1.6
4,750,727	-		Psyr_3992	0.15	+0.1
4,750,727	-		Psyr_3992	0.15	-0.7
4,750,727	-		Psyr_3992	0.15	+0.0
4,750,727	-		Psyr_3992	0.15	-2.6
4,750,727	-		Psyr_3992	0.15	+0.0
4,750,727	-		Psyr_3992	0.15	-0.3
4,750,727	-		Psyr_3992	0.15	+0.9
4,750,799	+		Psyr_3992	0.25	+0.5
4,750,800	-				-1.0
4,750,883	-		Psyr_3992	0.37	-0.8
4,751,282	-				-3.2
4,751,306	+				-2.0
4,751,306	+				-0.5
4,751,306	+				-0.8
4,751,306	+				-0.4
4,751,307	-				-2.8
4,751,307	-				-3.0
4,751,307	-				-0.7
4,751,307	-				-1.6
4,751,307	-				-3.5
4,751,307	-				-2.8
4,751,307	-				-3.3
4,751,307	-				-2.0
4,751,408	-				-3.2
4,751,438	-				-2.5
4,751,487	+				-0.2
4,751,488	-				-1.9
4,751,488	-				-2.3
4,751,488	-				-1.0
4,751,509	+				-1.6
4,751,531	-				-1.0
4,751,546	-				-2.0
4,751,546	-				-2.3
4,751,546	-				-1.0