Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2731

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
3,313,763	+		Psyr_2730	0.49	+1.0
3,313,764	-		Psyr_2730	0.49	-2.0
3,313,832	+		Psyr_2730	0.54	+2.6
3,313,833	-		Psyr_2730	0.55	-0.4
3,313,833	-		Psyr_2730	0.55	+0.2
3,313,833	-		Psyr_2730	0.55	-2.4
3,313,894	+		Psyr_2730	0.59	-0.2
3,313,894	+		Psyr_2730	0.59	+0.1
3,313,894	+		Psyr_2730	0.59	-1.0
3,313,894	+		Psyr_2730	0.59	+0.9
3,313,894	+		Psyr_2730	0.59	+0.9
3,313,894	+		Psyr_2730	0.59	-0.4
3,313,894	+		Psyr_2730	0.59	-1.8
3,313,894	+		Psyr_2730	0.59	-2.8
3,313,894	+		Psyr_2730	0.59	+0.3
3,313,894	+		Psyr_2730	0.59	-0.9
3,313,894	+		Psyr_2730	0.59	-1.9
3,313,894	+		Psyr_2730	0.59	-1.2
3,313,894	+		Psyr_2730	0.59	+1.1
3,313,894	+		Psyr_2730	0.59	-0.4
3,313,894	+		Psyr_2730	0.59	+0.4
3,313,894	+		Psyr_2730	0.59	-0.4
3,313,894	+		Psyr_2730	0.59	-0.2
3,313,894	+		Psyr_2730	0.59	-1.1
3,313,894	+		Psyr_2730	0.59	+0.1
3,313,894	+		Psyr_2730	0.59	+1.8
3,313,894	+		Psyr_2730	0.59	-0.9
3,313,894	+		Psyr_2730	0.59	+0.1
3,313,895	-		Psyr_2730	0.59	-0.1
3,313,895	-		Psyr_2730	0.59	-1.0
3,313,895	-		Psyr_2730	0.59	-0.1
3,313,895	-		Psyr_2730	0.59	-1.0
3,313,895	-		Psyr_2730	0.59	+0.3
3,313,895	-		Psyr_2730	0.59	+2.1
3,313,895	-		Psyr_2730	0.59	-1.4
3,313,895	-		Psyr_2730	0.59	+0.6
3,313,895	-		Psyr_2730	0.59	+1.1
3,313,895	-		Psyr_2730	0.59	-0.6
3,313,895	-		Psyr_2730	0.59	-0.7
3,314,045	+		Psyr_2730	0.71	-1.0
3,314,046	-		Psyr_2730	0.71	-0.4
3,314,249	+		Psyr_2730	0.86	-0.9
3,314,249	+		Psyr_2730	0.86	+1.6
3,314,249	+		Psyr_2730	0.86	+0.4
3,314,250	-		Psyr_2730	0.86	-0.4
3,314,250	-		Psyr_2730	0.86	+0.2
3,314,250	-		Psyr_2730	0.86	+0.7
3,314,262	+		Psyr_2730	0.87	-0.9
3,314,262	+		Psyr_2730	0.87	-0.4
3,314,263	-		Psyr_2730	0.87	-0.4
3,314,263	-		Psyr_2730	0.87	-1.4
3,314,263	-		Psyr_2730	0.87	+0.6
3,314,264	+		Psyr_2730	0.87	-0.2
3,314,264	+		Psyr_2730	0.87	-0.8
3,314,264	+		Psyr_2730	0.87	-0.4
3,314,264	+		Psyr_2730	0.87	-1.3
3,314,264	+		Psyr_2730	0.87	-0.4
3,314,264	+		Psyr_2730	0.87	-2.4
3,314,264	+		Psyr_2730	0.87	-0.4
3,314,264	+		Psyr_2730	0.87	-1.1
3,314,264	+		Psyr_2730	0.87	-0.0
3,314,265	-		Psyr_2730	0.87	+0.1
3,314,265	-		Psyr_2730	0.87	+0.3
3,314,265	-		Psyr_2730	0.87	-1.0
3,314,265	-		Psyr_2730	0.87	+0.6
3,314,265	-		Psyr_2730	0.87	-1.0
3,314,265	-		Psyr_2730	0.87	+1.1
3,314,265	-		Psyr_2730	0.87	-1.4
3,314,265	-		Psyr_2730	0.87	+0.9
3,314,265	-		Psyr_2730	0.87	-0.4
3,314,265	-		Psyr_2730	0.87	+0.1
3,314,265	-		Psyr_2730	0.87	-1.1
3,314,267	+		Psyr_2730	0.87	-1.0
3,314,268	-		Psyr_2730	0.87	-0.4
3,314,268	-		Psyr_2730	0.87	+0.1
3,314,268	-		Psyr_2730	0.87	-0.3
3,314,268	-		Psyr_2730	0.87	-1.0
3,314,268	-		Psyr_2730	0.87	+0.3
3,314,268	-		Psyr_2730	0.87	-0.4
3,314,268	-		Psyr_2730	0.87	+0.4
3,314,448	+				+0.2
3,314,448	+				-1.4
3,314,448	+				-0.3
3,314,449	-				-1.4
3,314,449	-				-0.8
3,314,449	-				+0.1
3,314,809	+				+1.0
3,314,810	-				-0.1
3,315,041	+		Psyr_2731	0.23	-0.0
3,315,041	+		Psyr_2731	0.23	-0.6
3,315,041	+		Psyr_2731	0.23	+0.3
3,315,042	-		Psyr_2731	0.23	-0.0
3,315,179	+		Psyr_2731	0.34	+0.6
3,315,179	+		Psyr_2731	0.34	-0.6
3,315,180	-		Psyr_2731	0.34	-0.4
3,315,180	-		Psyr_2731	0.34	+0.1
3,315,180	-		Psyr_2731	0.34	-0.5
3,315,285	+		Psyr_2731	0.43	+0.1
3,315,426	-		Psyr_2731	0.54	+1.6
3,315,426	-		Psyr_2731	0.54	-0.4
3,315,449	+		Psyr_2731	0.56	+1.1
3,315,449	+		Psyr_2731	0.56	+1.7
3,315,449	+		Psyr_2731	0.56	+1.4
3,315,449	+		Psyr_2731	0.56	+1.0
3,315,449	+		Psyr_2731	0.56	-2.4
3,315,449	+		Psyr_2731	0.56	+1.2
3,315,449	+		Psyr_2731	0.56	+0.1
3,315,449	+		Psyr_2731	0.56	+0.6
3,315,449	+		Psyr_2731	0.56	+0.4
3,315,449	+		Psyr_2731	0.56	+0.1
3,315,449	+		Psyr_2731	0.56	-0.2
3,315,449	+		Psyr_2731	0.56	-0.7
3,315,449	+		Psyr_2731	0.56	+1.5
3,315,450	-		Psyr_2731	0.56	-0.8
3,315,450	-		Psyr_2731	0.56	+1.0
3,315,450	-		Psyr_2731	0.56	+2.3
3,315,450	-		Psyr_2731	0.56	+0.6
3,315,450	-		Psyr_2731	0.56	+0.8
3,315,450	-		Psyr_2731	0.56	-0.0
3,315,450	-		Psyr_2731	0.56	+0.7
3,315,450	-		Psyr_2731	0.56	+0.1
3,315,450	-		Psyr_2731	0.56	-0.1
3,315,450	-		Psyr_2731	0.56	+0.2
3,315,728	+		Psyr_2731	0.79	-1.8
3,315,728	+		Psyr_2731	0.79	+0.9
3,315,729	-		Psyr_2731	0.79	+1.1
3,315,729	-		Psyr_2731	0.79	-0.4
3,315,729	-		Psyr_2731	0.79	+0.1
3,316,060	+				-1.0
3,316,060	+				+0.6
3,316,061	-				+0.7
3,316,061	-				+0.3
3,316,061	-				-0.1
3,316,064	+				+0.7
3,316,064	+				-0.3
3,316,064	+				+0.3
3,316,064	+				+0.1
3,316,064	+				-0.1
3,316,064	+				-0.4
3,316,065	-				-0.6
3,316,065	-				+1.7
3,316,065	-				+1.6
3,316,065	-				-0.2
3,316,065	-				-3.0
3,316,065	-				-1.6
3,316,067	-				-2.2
3,316,067	-				-0.9
3,316,067	-				-1.6
3,316,119	+				-0.1
3,316,409	+				-1.5
3,316,409	+				-0.5
3,316,409	+				-0.5
3,316,409	+				-2.0
3,316,409	+				-1.9
3,316,409	+				-2.0
3,316,410	-				+0.0
3,316,410	-				-0.7
3,316,410	-				-1.8
3,316,410	-				+2.7
3,316,410	-				+1.4
3,316,473	+				-0.6
3,316,483	+				-0.5
3,316,483	+				-0.7
3,316,483	+				-2.8
3,316,483	+				+1.1
3,316,495	+				+1.1
3,316,526	+				-0.9
3,316,526	+				-1.8
3,316,526	+				-1.5
3,316,526	+				-0.9
3,316,527	-				+1.9
3,316,527	-				+1.4
3,316,527	-				+0.4
3,316,530	-				-0.9
3,316,530	-				+1.1
3,316,564	+				+1.4
3,316,564	+				-0.5
3,316,564	+				-0.7
3,316,565	-				-0.2
3,316,568	+				+1.0
3,316,568	+				+0.1
3,316,568	+				-1.3
3,316,568	+				-0.8
3,316,568	+				+0.7
3,316,569	-				+0.0
3,316,603	+		Psyr_2732	0.11	+0.8
3,316,604	-		Psyr_2732	0.12	-0.5
3,316,735	+		Psyr_2732	0.25	+0.1
3,316,834	+		Psyr_2732	0.36	+0.5
3,316,834	+		Psyr_2732	0.36	+0.7
3,316,835	-		Psyr_2732	0.36	+1.1
3,316,835	-		Psyr_2732	0.36	-3.0
3,316,835	-		Psyr_2732	0.36	+1.1
3,316,835	-		Psyr_2732	0.36	-0.2
3,316,835	-		Psyr_2732	0.36	-0.5
3,316,835	-		Psyr_2732	0.36	-0.9
3,316,835	-		Psyr_2732	0.36	-0.5
3,316,876	+		Psyr_2732	0.40	-0.0