Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2683

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
3,256,220	-		Psyr_2682	0.78	+0.9
3,256,235	-		Psyr_2682	0.79	-0.7
3,256,341	+		Psyr_2682	0.83	+0.3
3,256,341	+		Psyr_2682	0.83	+0.2
3,256,341	+		Psyr_2682	0.83	+0.5
3,256,341	+		Psyr_2682	0.83	+1.1
3,256,342	-		Psyr_2682	0.84	-0.0
3,256,342	-		Psyr_2682	0.84	-1.9
3,256,342	-		Psyr_2682	0.84	+0.3
3,256,342	-		Psyr_2682	0.84	+0.7
3,256,342	-		Psyr_2682	0.84	-0.2
3,256,584	+				-0.3
3,256,584	+				-0.6
3,256,585	-				+0.3
3,256,585	-				+0.9
3,256,585	-				+0.1
3,256,666	+				-0.5
3,256,666	+				-0.5
3,256,667	-				-1.3
3,256,667	-				+0.8
3,256,667	-				+0.4
3,256,699	+				+0.3
3,256,699	+				+0.2
3,256,700	-				+0.4
3,256,735	-				-2.2
3,256,735	-				+0.5
3,256,810	-				-1.7
3,256,862	+				-0.1
3,256,862	+				+1.1
3,256,868	+				+0.4
3,256,869	-				+1.5
3,257,041	+				+0.5
3,257,042	-				-3.3
3,257,053	+				-0.0
3,257,053	+				+0.3
3,257,064	-				-0.8
3,257,064	-				+0.3
3,257,066	+				+1.0
3,257,084	+				+0.1
3,257,085	-				-0.0
3,257,085	-				-0.7
3,257,085	-				+0.2
3,257,115	-				+0.5
3,257,296	+				-1.3
3,257,296	+				-0.7
3,257,297	-				+0.1
3,257,297	-				+0.3
3,257,297	-				-0.5
3,257,297	-				-0.5
3,257,403	+		Psyr_2683	0.16	+0.7
3,257,403	+		Psyr_2683	0.16	+0.9
3,257,403	+		Psyr_2683	0.16	-0.2
3,257,403	+		Psyr_2683	0.16	+0.1
3,257,404	-		Psyr_2683	0.16	-0.1
3,257,433	+		Psyr_2683	0.18	-1.5
3,257,433	+		Psyr_2683	0.18	-1.7
3,257,433	+		Psyr_2683	0.18	-0.3
3,257,434	-		Psyr_2683	0.18	-1.2
3,257,434	-		Psyr_2683	0.18	+0.1
3,257,493	+		Psyr_2683	0.22	+1.6
3,257,501	-		Psyr_2683	0.22	-2.3
3,257,636	+		Psyr_2683	0.32	-0.1
3,257,637	-		Psyr_2683	0.32	-0.3
3,257,723	+		Psyr_2683	0.38	+1.9
3,257,786	+		Psyr_2683	0.42	+0.1
3,257,809	+		Psyr_2683	0.44	+0.3
3,257,834	+		Psyr_2683	0.46	-0.9
3,257,834	+		Psyr_2683	0.46	+1.1
3,257,902	+		Psyr_2683	0.50	-1.4
3,257,903	-		Psyr_2683	0.51	-0.5
3,257,929	+		Psyr_2683	0.52	+0.5
3,257,929	+		Psyr_2683	0.52	-0.0
3,257,929	+		Psyr_2683	0.52	-1.5
3,257,929	+		Psyr_2683	0.52	-1.0
3,257,929	+		Psyr_2683	0.52	+0.9
3,257,929	+		Psyr_2683	0.52	+1.1
3,257,929	+		Psyr_2683	0.52	-3.0
3,257,930	-		Psyr_2683	0.52	+1.1
3,257,930	-		Psyr_2683	0.52	-2.0
3,257,930	-		Psyr_2683	0.52	-0.7
3,257,932	+		Psyr_2683	0.53	-0.5
3,258,005	+		Psyr_2683	0.58	-1.2
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	+1.0
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	+0.5
3,258,005	+		Psyr_2683	0.58	+0.5
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	+1.9
3,258,005	+		Psyr_2683	0.58	+0.1
3,258,005	+		Psyr_2683	0.58	-0.9
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	-0.1
3,258,005	+		Psyr_2683	0.58	-1.5
3,258,005	+		Psyr_2683	0.58	-0.0
3,258,005	+		Psyr_2683	0.58	-1.8
3,258,005	+		Psyr_2683	0.58	+0.7
3,258,005	+		Psyr_2683	0.58	-0.5
3,258,005	+		Psyr_2683	0.58	+0.3
3,258,006	-		Psyr_2683	0.58	+0.3
3,258,006	-		Psyr_2683	0.58	+1.1
3,258,006	-		Psyr_2683	0.58	+0.4
3,258,006	-		Psyr_2683	0.58	-1.2
3,258,006	-		Psyr_2683	0.58	+1.1
3,258,006	-		Psyr_2683	0.58	+0.2
3,258,006	-		Psyr_2683	0.58	+0.5
3,258,006	-		Psyr_2683	0.58	-0.3
3,258,007	+		Psyr_2683	0.58	+0.2
3,258,007	+		Psyr_2683	0.58	+0.1
3,258,007	+		Psyr_2683	0.58	-0.5
3,258,007	+		Psyr_2683	0.58	+0.1
3,258,007	+		Psyr_2683	0.58	-2.0
3,258,007	+		Psyr_2683	0.58	+1.1
3,258,007	+		Psyr_2683	0.58	+0.4
3,258,008	-		Psyr_2683	0.58	+0.7
3,258,040	+		Psyr_2683	0.60	-0.1
3,258,040	+		Psyr_2683	0.60	-0.5
3,258,100	+		Psyr_2683	0.64	+0.1
3,258,100	+		Psyr_2683	0.64	+1.1
3,258,101	-		Psyr_2683	0.64	-0.5
3,258,101	-		Psyr_2683	0.64	-0.5
3,258,125	+		Psyr_2683	0.66	+0.0
3,258,125	+		Psyr_2683	0.66	-2.2
3,258,125	+		Psyr_2683	0.66	-0.1
3,258,125	+		Psyr_2683	0.66	+1.1
3,258,125	+		Psyr_2683	0.66	-0.5
3,258,125	+		Psyr_2683	0.66	+0.1
3,258,125	+		Psyr_2683	0.66	-0.0
3,258,125	+		Psyr_2683	0.66	-2.5
3,258,125	+		Psyr_2683	0.66	+0.5
3,258,126	-				+0.5
3,258,126	-		Psyr_2683	0.66	-1.3
3,258,126	-		Psyr_2683	0.66	-0.5
3,258,126	-		Psyr_2683	0.66	-1.5
3,258,126	-		Psyr_2683	0.66	-0.9
3,258,126	-		Psyr_2683	0.66	-1.8
3,258,239	+		Psyr_2683	0.74	-0.5
3,258,239	+		Psyr_2683	0.74	+1.1
3,258,239	+		Psyr_2683	0.74	+1.5
3,258,240	-		Psyr_2683	0.74	+0.8
3,258,240	-		Psyr_2683	0.74	-0.3
3,258,240	-		Psyr_2683	0.74	-1.5
3,258,243	+		Psyr_2683	0.74	+0.5
3,258,243	+		Psyr_2683	0.74	+1.1
3,258,243	+		Psyr_2683	0.74	-1.3
3,258,243	+		Psyr_2683	0.74	-0.9
3,258,244	-		Psyr_2683	0.74	+0.3
3,258,244	-		Psyr_2683	0.74	+0.5
3,258,244	-		Psyr_2683	0.74	+0.1
3,258,244	-		Psyr_2683	0.74	-1.1
3,258,244	-		Psyr_2683	0.74	-0.3
3,258,258	+		Psyr_2683	0.75	-0.3
3,258,259	-		Psyr_2683	0.75	-0.1
3,258,288	+		Psyr_2683	0.78	-1.9
3,258,307	-		Psyr_2683	0.79	-1.7
3,258,415	+		Psyr_2683	0.86	+0.3
3,258,416	-		Psyr_2683	0.86	+0.1
3,258,417	+		Psyr_2683	0.87	-1.3
3,258,418	-		Psyr_2683	0.87	+1.5
3,258,418	-		Psyr_2683	0.87	-0.1
3,258,418	-		Psyr_2683	0.87	-2.0
3,258,435	+		Psyr_2683	0.88	-1.2
3,258,435	+		Psyr_2683	0.88	-2.0
3,258,435	+		Psyr_2683	0.88	+2.8
3,258,459	+		Psyr_2683	0.89	+0.8
3,258,554	+				+0.2
3,258,557	-				-2.8
3,258,566	+				-1.8
3,258,566	+				+1.1
3,258,583	+				-0.6
3,258,585	+				-1.3
3,258,585	+				+0.5
3,258,585	+				-0.3
3,258,585	+				-0.5
3,258,586	-				-0.5
3,258,630	-				-0.1
3,258,703	-				+0.5
3,258,747	-				+1.7
3,258,748	+				+0.1
3,258,748	+				+0.6
3,258,748	+				-1.6
3,258,749	-				+1.3
3,258,749	-				-1.5
3,258,749	-				-0.3
3,258,749	-				-0.5
3,258,749	-				+0.0
3,258,780	+		Psyr_2684	0.11	-1.3
3,258,781	-		Psyr_2684	0.11	-2.0
3,258,979	+		Psyr_2684	0.27	-0.0
3,258,980	-		Psyr_2684	0.27	-1.6
3,259,132	+		Psyr_2684	0.39	-0.5
3,259,180	+		Psyr_2684	0.43	-0.5
3,259,180	+		Psyr_2684	0.43	-2.0
3,259,180	+		Psyr_2684	0.43	-1.5
3,259,180	+		Psyr_2684	0.43	+1.1
3,259,181	-		Psyr_2684	0.43	+0.1
3,259,184	+		Psyr_2684	0.43	-1.2
3,259,184	+		Psyr_2684	0.43	-0.5
3,259,184	+		Psyr_2684	0.43	+0.1
3,259,184	+		Psyr_2684	0.43	+1.0
3,259,184	+		Psyr_2684	0.43	-0.3
3,259,184	+		Psyr_2684	0.43	+0.1
3,259,184	+		Psyr_2684	0.43	+0.2
3,259,185	-		Psyr_2684	0.43	+0.8
3,259,185	-		Psyr_2684	0.43	-1.8
3,259,185	-		Psyr_2684	0.43	+0.7
3,259,226	-		Psyr_2684	0.46	-0.0
3,259,229	+		Psyr_2684	0.47	-0.1
3,259,229	+		Psyr_2684	0.47	-0.8
3,259,229	+		Psyr_2684	0.47	+1.5
3,259,230	-		Psyr_2684	0.47	-0.5
3,259,230	-		Psyr_2684	0.47	+0.5
3,259,456	+		Psyr_2684	0.65	-0.5
3,259,457	-		Psyr_2684	0.65	+0.1
3,259,521	+		Psyr_2684	0.70	-0.5
3,259,521	+		Psyr_2684	0.70	-0.6
3,259,522	-		Psyr_2684	0.70	+0.2
3,259,522	-		Psyr_2684	0.70	-0.9
3,259,533	+		Psyr_2684	0.71	-0.9
3,259,588	+		Psyr_2684	0.75	-0.5
3,259,594	+		Psyr_2684	0.76	+0.7
3,259,594	+		Psyr_2684	0.76	-2.5
3,259,596	+		Psyr_2684	0.76	-0.5
3,259,596	+		Psyr_2684	0.76	+0.1
3,259,596	+		Psyr_2684	0.76	-1.9
3,259,596	+		Psyr_2684	0.76	-2.3
3,259,596	+		Psyr_2684	0.76	-0.5
3,259,596	+		Psyr_2684	0.76	+0.5
3,259,597	-		Psyr_2684	0.76	+0.5
3,259,597	-		Psyr_2684	0.76	+1.1
3,259,597	-		Psyr_2684	0.76	+0.3
3,259,597	-		Psyr_2684	0.76	+0.9
3,259,597	-		Psyr_2684	0.76	-0.7
3,259,597	-		Psyr_2684	0.76	-1.8