Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0886

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
1,007,627	+		Psyr_0884	0.59	-1.4
1,007,627	+		Psyr_0884	0.59	+1.2
1,007,627	+		Psyr_0884	0.59	+0.7
1,007,627	+		Psyr_0884	0.59	+1.1
1,007,627	+		Psyr_0884	0.59	-0.5
1,007,627	+		Psyr_0884	0.59	+0.4
1,007,628	-		Psyr_0884	0.60	-1.9
1,007,628	-		Psyr_0884	0.60	+0.8
1,007,659	+		Psyr_0884	0.66	+1.5
1,007,659	+		Psyr_0884	0.66	-0.2
1,007,659	+		Psyr_0884	0.66	+0.6
1,007,659	+		Psyr_0884	0.66	+0.1
1,007,660	-		Psyr_0884	0.66	+1.1
1,007,702	+		Psyr_0884	0.76	-1.9
1,007,702	+		Psyr_0884	0.76	+1.1
1,007,703	-		Psyr_0884	0.76	-0.3
1,007,741	+		Psyr_0884	0.84	+1.5
1,007,983	+		Psyr_0885	0.38	-0.3
1,008,112	+		Psyr_0885	0.67	+1.9
1,008,112	+		Psyr_0885	0.67	+0.7
1,008,287	+				+0.9
1,008,290	+				+0.0
1,008,340	+				+0.5
1,008,340	+				-0.2
1,008,341	-				+1.4
1,008,359	+				+1.1
1,008,391	+				+0.6
1,008,391	+				+0.1
1,008,391	+				+1.1
1,008,391	+				+1.0
1,008,392	-				+0.1
1,008,392	-				-1.9
1,008,392	-				-0.9
1,008,392	-				-0.2
1,008,392	-				+1.1
1,008,392	-				-2.5
1,008,396	+				-0.3
1,008,396	+				-0.2
1,008,397	-				+0.1
1,008,398	+				-2.5
1,008,398	+				+0.1
1,008,398	+				-0.7
1,008,398	+				+0.7
1,008,398	+				+0.7
1,008,398	+				+0.1
1,008,398	+				-0.4
1,008,399	-				+0.1
1,008,399	-				+0.1
1,008,399	-				+0.1
1,008,404	+				+1.1
1,008,432	+				+0.5
1,008,432	+				-0.4
1,008,432	+				+0.1
1,008,432	+				-0.7
1,008,432	+				-3.4
1,008,432	+				+0.3
1,008,432	+				-1.2
1,008,432	+				+0.3
1,008,433	-				+0.1
1,008,433	-				-2.8
1,008,433	-				+2.1
1,008,433	-				+0.2
1,008,433	-				-0.9
1,008,472	+				-0.6
1,008,472	+				-0.2
1,008,472	+				+0.1
1,008,472	+				+0.1
1,008,472	+				-0.5
1,008,472	+				+1.2
1,008,473	-				-0.9
1,008,473	-				-1.8
1,008,473	-				+0.1
1,008,473	-				-0.6
1,008,473	-				-0.9
1,008,473	-				-0.2
1,008,473	-				-0.1
1,008,473	-				-1.3
1,008,473	-				-1.5
1,008,473	-				-0.2
1,008,473	-				-0.9
1,008,473	-				-1.9
1,008,473	-				-0.9
1,008,473	-				-0.2
1,008,474	+				-0.3
1,008,474	+				-0.7
1,008,474	+				+0.1
1,008,474	+				-1.5
1,008,474	+				-0.3
1,008,474	+				+0.9
1,008,474	+				+0.3
1,008,474	+				+0.3
1,008,474	+				+0.7
1,008,474	+				+1.0
1,008,474	+				-1.5
1,008,475	-				-0.2
1,008,475	-				-1.7
1,008,475	-				-2.6
1,008,475	-				+0.1
1,008,475	-				+1.1
1,008,475	-				-0.7
1,008,475	-				-1.4
1,008,475	-				-0.7
1,008,475	-				-0.9
1,008,475	-				+0.6
1,008,475	-				-1.1
1,008,475	-				-1.9
1,008,548	+				+1.1
1,008,549	-				+0.1
1,008,987	-		Psyr_0886	0.46	-1.1
1,008,987	-		Psyr_0886	0.46	-0.3
1,009,022	+		Psyr_0886	0.49	-0.9
1,009,022	+		Psyr_0886	0.49	-1.9
1,009,023	-		Psyr_0886	0.49	-0.9
1,009,141	+		Psyr_0886	0.61	+0.4
1,009,141	+		Psyr_0886	0.61	-0.2
1,009,142	-		Psyr_0886	0.61	-1.6
1,009,142	-		Psyr_0886	0.61	+0.6
1,009,142	-		Psyr_0886	0.61	-1.5
1,009,155	+		Psyr_0886	0.63	+0.0
1,009,429	+				-0.5
1,009,429	+		Psyr_0886	0.90	-1.7
1,009,430	-				+0.1
1,009,430	-				-0.4
1,009,516	+				-1.2
1,009,516	+				+1.1
1,009,516	+				-1.3
1,009,517	-				+0.6
1,009,517	-				+1.9
1,009,517	-				-1.6
1,009,598	+		Psyr_0887	0.13	-1.8
1,009,599	-		Psyr_0887	0.13	+1.4
1,009,599	-		Psyr_0887	0.13	-0.6
1,009,624	+		Psyr_0887	0.19	+0.4
1,009,624	+		Psyr_0887	0.19	-1.0
1,009,625	-		Psyr_0887	0.19	+0.3
1,009,644	+		Psyr_0887	0.23	-0.6
1,009,644	+		Psyr_0887	0.23	-0.7
1,009,644	+		Psyr_0887	0.23	-0.5
1,009,644	+		Psyr_0887	0.23	-1.2
1,009,644	+		Psyr_0887	0.23	-0.3
1,009,645	-		Psyr_0887	0.23	-1.5
1,009,645	-		Psyr_0887	0.23	-0.3
1,009,678	+		Psyr_0887	0.30	+0.8
1,009,678	+		Psyr_0887	0.30	-0.2
1,009,678	+		Psyr_0887	0.30	-1.9
1,009,678	+		Psyr_0887	0.30	+0.1
1,009,678	+		Psyr_0887	0.30	-0.2
1,009,678	+		Psyr_0887	0.30	+0.4
1,009,678	+		Psyr_0887	0.30	-1.1
1,009,679	-		Psyr_0887	0.30	+0.1
1,009,679	-		Psyr_0887	0.30	-1.7
1,009,679	-		Psyr_0887	0.30	+1.4
1,009,679	-		Psyr_0887	0.30	-0.9
1,009,825	+		Psyr_0887	0.60	-2.0
1,009,826	-		Psyr_0887	0.60	-0.9
1,009,826	-		Psyr_0887	0.60	-0.2
1,009,858	+		Psyr_0887	0.67	+0.7
1,009,858	+		Psyr_0887	0.67	-0.5
1,009,858	+		Psyr_0887	0.67	+0.5
1,009,858	+		Psyr_0887	0.67	+0.3
1,009,858	+		Psyr_0887	0.67	-0.6
1,009,858	+		Psyr_0887	0.67	-2.5
1,009,858	+		Psyr_0887	0.67	-0.0
1,009,858	+		Psyr_0887	0.67	-0.5
1,009,858	+		Psyr_0887	0.67	-0.3
1,009,858	+		Psyr_0887	0.67	+0.1
1,009,859	-		Psyr_0887	0.67	-0.1
1,009,859	-		Psyr_0887	0.67	-0.7
1,009,859	-		Psyr_0887	0.67	-0.2
1,009,927	+		Psyr_0887	0.81	+0.5
1,009,927	+		Psyr_0887	0.81	-0.7
1,009,927	+		Psyr_0887	0.81	-0.7
1,009,927	+		Psyr_0887	0.81	+1.2
1,009,927	+		Psyr_0887	0.81	-0.9
1,009,927	+		Psyr_0887	0.81	+0.4
1,009,927	+		Psyr_0887	0.81	+0.7
1,009,927	+		Psyr_0887	0.81	+1.0
1,009,927	+		Psyr_0887	0.81	-1.9
1,009,927	+		Psyr_0887	0.81	-0.5
1,009,927	+		Psyr_0887	0.81	+0.1
1,009,927	+		Psyr_0887	0.81	+0.1
1,009,927	+		Psyr_0887	0.81	-0.3
1,009,927	+		Psyr_0887	0.81	-0.1
1,009,928	-		Psyr_0887	0.82	-0.3
1,009,928	-		Psyr_0887	0.82	+0.8
1,009,928	-		Psyr_0887	0.82	+0.8
1,009,928	-		Psyr_0887	0.82	-0.0
1,009,928	-		Psyr_0887	0.82	-0.4
1,009,928	-		Psyr_0887	0.82	-1.7
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	+1.4
1,009,928	-		Psyr_0887	0.82	+0.1
1,009,928	-		Psyr_0887	0.82	-0.3
1,009,928	-		Psyr_0887	0.82	-0.3
1,009,928	-		Psyr_0887	0.82	-0.8
1,009,928	-		Psyr_0887	0.82	-0.5
1,009,928	-		Psyr_0887	0.82	-0.0
1,009,928	-		Psyr_0887	0.82	-0.0
1,009,928	-		Psyr_0887	0.82	-0.2