Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4012

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4011 and Pf6N2E2_4012 are separated by 267 nucleotidesPf6N2E2_4012 and Pf6N2E2_4013 are separated by 138 nucleotides Pf6N2E2_4011 - Sensory box/GGDEF family protein, at 4,682,075 to 4,683,064 _4011 Pf6N2E2_4012 - response regulator, at 4,683,332 to 4,684,549 _4012 Pf6N2E2_4013 - 5-aminovalerate transaminase (EC 2.6.1.48) (from data), at 4,684,688 to 4,685,965 _4013 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.349 kb on - strand, within Pf6N2E2_4011at 4682.377 kb on + strand, within Pf6N2E2_4011at 4682.377 kb on + strand, within Pf6N2E2_4011at 4682.423 kb on + strand, within Pf6N2E2_4011at 4682.658 kb on + strand, within Pf6N2E2_4011at 4682.658 kb on + strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.659 kb on - strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.665 kb on + strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.666 kb on - strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.723 kb on + strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.724 kb on - strand, within Pf6N2E2_4011at 4682.939 kb on - strand, within Pf6N2E2_4011at 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.020 kb on + strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.021 kb on - strandat 4683.040 kb on + strandat 4683.041 kb on - strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.223 kb on + strandat 4683.224 kb on - strandat 4683.333 kb on + strandat 4683.334 kb on - strandat 4683.477 kb on + strand, within Pf6N2E2_4012at 4683.478 kb on - strand, within Pf6N2E2_4012at 4683.496 kb on + strand, within Pf6N2E2_4012at 4683.496 kb on + strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.497 kb on - strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.498 kb on + strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.499 kb on - strand, within Pf6N2E2_4012at 4683.551 kb on + strand, within Pf6N2E2_4012at 4683.696 kb on + strand, within Pf6N2E2_4012at 4683.697 kb on - strand, within Pf6N2E2_4012at 4684.383 kb on + strand, within Pf6N2E2_4012at 4684.383 kb on + strand, within Pf6N2E2_4012at 4684.383 kb on + strand, within Pf6N2E2_4012at 4684.383 kb on + strand, within Pf6N2E2_4012at 4684.384 kb on - strand, within Pf6N2E2_4012at 4684.384 kb on - strand, within Pf6N2E2_4012at 4684.524 kb on - strandat 4684.569 kb on + strandat 4684.569 kb on + strandat 4684.569 kb on + strandat 4684.570 kb on - strandat 4684.570 kb on - strandat 4684.570 kb on - strandat 4684.570 kb on - strandat 4684.580 kb on + strandat 4684.581 kb on - strandat 4684.634 kb on + strandat 4684.635 kb on - strandat 4684.785 kb on + strandat 4684.785 kb on + strandat 4684.786 kb on - strandat 4684.786 kb on - strandat 4684.786 kb on - strandat 4684.893 kb on - strand, within Pf6N2E2_4013at 4684.938 kb on + strand, within Pf6N2E2_4013at 4684.939 kb on - strand, within Pf6N2E2_4013at 4685.070 kb on + strand, within Pf6N2E2_4013at 4685.070 kb on + strand, within Pf6N2E2_4013at 4685.070 kb on + strand, within Pf6N2E2_4013at 4685.071 kb on - strand, within Pf6N2E2_4013at 4685.071 kb on - strand, within Pf6N2E2_4013at 4685.071 kb on - strand, within Pf6N2E2_4013at 4685.071 kb on - strand, within Pf6N2E2_4013at 4685.071 kb on - strand, within Pf6N2E2_4013at 4685.109 kb on + strand, within Pf6N2E2_4013at 4685.109 kb on + strand, within Pf6N2E2_4013at 4685.109 kb on + strand, within Pf6N2E2_4013at 4685.110 kb on - strand, within Pf6N2E2_4013at 4685.110 kb on - strand, within Pf6N2E2_4013at 4685.110 kb on - strand, within Pf6N2E2_4013at 4685.110 kb on - strand, within Pf6N2E2_4013at 4685.315 kb on + strand, within Pf6N2E2_4013at 4685.315 kb on + strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.316 kb on - strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.319 kb on + strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.320 kb on - strand, within Pf6N2E2_4013at 4685.339 kb on + strand, within Pf6N2E2_4013at 4685.451 kb on + strand, within Pf6N2E2_4013at 4685.488 kb on + strand, within Pf6N2E2_4013at 4685.500 kb on - strand, within Pf6N2E2_4013at 4685.500 kb on - strand, within Pf6N2E2_4013

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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4,682,349 - Pf6N2E2_4011 0.28 +0.5
4,682,349 - Pf6N2E2_4011 0.28 +1.1
4,682,349 - Pf6N2E2_4011 0.28 +0.5
4,682,377 + Pf6N2E2_4011 0.31 +1.1
4,682,377 + Pf6N2E2_4011 0.31 -0.7
4,682,423 + Pf6N2E2_4011 0.35 -0.4
4,682,658 + Pf6N2E2_4011 0.59 +1.5
4,682,658 + Pf6N2E2_4011 0.59 -0.3
4,682,659 - Pf6N2E2_4011 0.59 -0.6
4,682,659 - Pf6N2E2_4011 0.59 +0.0
4,682,659 - Pf6N2E2_4011 0.59 +1.0
4,682,665 + Pf6N2E2_4011 0.60 -0.9
4,682,665 + Pf6N2E2_4011 0.60 +1.0
4,682,665 + Pf6N2E2_4011 0.60 +0.6
4,682,665 + Pf6N2E2_4011 0.60 +0.3
4,682,666 - Pf6N2E2_4011 0.60 +0.3
4,682,666 - Pf6N2E2_4011 0.60 +2.3
4,682,666 - Pf6N2E2_4011 0.60 +0.3
4,682,666 - Pf6N2E2_4011 0.60 +0.6
4,682,666 - Pf6N2E2_4011 0.60 +0.5
4,682,666 - Pf6N2E2_4011 0.60 +1.3
4,682,723 + Pf6N2E2_4011 0.65 +0.7
4,682,723 + Pf6N2E2_4011 0.65 -1.1
4,682,723 + Pf6N2E2_4011 0.65 -0.7
4,682,723 + Pf6N2E2_4011 0.65 +0.3
4,682,723 + Pf6N2E2_4011 0.65 +0.1
4,682,723 + Pf6N2E2_4011 0.65 -0.3
4,682,723 + Pf6N2E2_4011 0.65 -0.7
4,682,724 - Pf6N2E2_4011 0.66 -0.1
4,682,724 - Pf6N2E2_4011 0.66 +0.1
4,682,724 - Pf6N2E2_4011 0.66 +0.7
4,682,724 - Pf6N2E2_4011 0.66 -0.2
4,682,724 - Pf6N2E2_4011 0.66 +0.7
4,682,724 - Pf6N2E2_4011 0.66 +0.3
4,682,724 - Pf6N2E2_4011 0.66 +1.5
4,682,724 - Pf6N2E2_4011 0.66 +0.2
4,682,939 - Pf6N2E2_4011 0.87 +0.4
4,683,020 + +0.6
4,683,020 + +0.3
4,683,020 + +0.2
4,683,020 + +0.1
4,683,020 + -0.8
4,683,021 - +0.3
4,683,021 - +1.1
4,683,021 - +0.2
4,683,021 - -3.0
4,683,021 - +1.0
4,683,021 - +0.2
4,683,021 - -0.0
4,683,040 + -1.1
4,683,041 - +1.9
4,683,223 + +0.2
4,683,223 + +0.4
4,683,223 + +0.5
4,683,223 + +0.9
4,683,223 + -0.7
4,683,223 + -0.1
4,683,224 - +1.1
4,683,333 + +0.6
4,683,334 - +0.3
4,683,477 + Pf6N2E2_4012 0.12 -0.7
4,683,478 - Pf6N2E2_4012 0.12 -0.1
4,683,496 + Pf6N2E2_4012 0.13 -1.6
4,683,496 + Pf6N2E2_4012 0.13 +0.8
4,683,497 - Pf6N2E2_4012 0.14 +0.3
4,683,497 - Pf6N2E2_4012 0.14 -0.8
4,683,497 - Pf6N2E2_4012 0.14 +0.2
4,683,497 - Pf6N2E2_4012 0.14 -0.2
4,683,497 - Pf6N2E2_4012 0.14 -2.4
4,683,497 - Pf6N2E2_4012 0.14 -0.5
4,683,498 + Pf6N2E2_4012 0.14 -0.8
4,683,498 + Pf6N2E2_4012 0.14 -0.1
4,683,498 + Pf6N2E2_4012 0.14 +0.1
4,683,498 + Pf6N2E2_4012 0.14 +0.2
4,683,498 + Pf6N2E2_4012 0.14 +0.8
4,683,498 + Pf6N2E2_4012 0.14 +0.1
4,683,498 + Pf6N2E2_4012 0.14 +0.7
4,683,499 - Pf6N2E2_4012 0.14 -0.7
4,683,499 - Pf6N2E2_4012 0.14 -1.2
4,683,499 - Pf6N2E2_4012 0.14 -0.2
4,683,499 - Pf6N2E2_4012 0.14 +0.1
4,683,499 - Pf6N2E2_4012 0.14 -0.5
4,683,551 + Pf6N2E2_4012 0.18 +0.0
4,683,696 + Pf6N2E2_4012 0.30 -0.4
4,683,697 - Pf6N2E2_4012 0.30 -0.4
4,684,383 + Pf6N2E2_4012 0.86 +1.0
4,684,383 + Pf6N2E2_4012 0.86 +0.4
4,684,383 + Pf6N2E2_4012 0.86 -2.3
4,684,383 + Pf6N2E2_4012 0.86 -0.1
4,684,384 - Pf6N2E2_4012 0.86 -0.6
4,684,384 - Pf6N2E2_4012 0.86 +0.9
4,684,524 - +0.2
4,684,569 + -0.1
4,684,569 + -0.1
4,684,569 + +0.0
4,684,570 - -0.3
4,684,570 - +0.4
4,684,570 - -1.3
4,684,570 - +0.5
4,684,580 + +0.6
4,684,581 - -0.6
4,684,634 + +0.9
4,684,635 - +0.6
4,684,785 + +0.6
4,684,785 + -0.0
4,684,786 - +1.0
4,684,786 - +0.2
4,684,786 - +1.5
4,684,893 - Pf6N2E2_4013 0.16 +0.5
4,684,938 + Pf6N2E2_4013 0.20 -0.9
4,684,939 - Pf6N2E2_4013 0.20 -0.7
4,685,070 + Pf6N2E2_4013 0.30 -1.5
4,685,070 + Pf6N2E2_4013 0.30 -0.1
4,685,070 + Pf6N2E2_4013 0.30 +0.8
4,685,071 - Pf6N2E2_4013 0.30 -1.6
4,685,071 - Pf6N2E2_4013 0.30 -0.9
4,685,071 - Pf6N2E2_4013 0.30 -0.4
4,685,071 - Pf6N2E2_4013 0.30 +1.6
4,685,071 - Pf6N2E2_4013 0.30 -1.0
4,685,109 + Pf6N2E2_4013 0.33 +0.8
4,685,109 + Pf6N2E2_4013 0.33 -0.2
4,685,109 + Pf6N2E2_4013 0.33 -1.2
4,685,110 - Pf6N2E2_4013 0.33 +0.9
4,685,110 - Pf6N2E2_4013 0.33 -1.9
4,685,110 - Pf6N2E2_4013 0.33 -0.3
4,685,110 - Pf6N2E2_4013 0.33 -1.2
4,685,315 + Pf6N2E2_4013 0.49 +0.1
4,685,315 + Pf6N2E2_4013 0.49 -0.2
4,685,316 - Pf6N2E2_4013 0.49 +1.3
4,685,316 - Pf6N2E2_4013 0.49 -0.4
4,685,316 - Pf6N2E2_4013 0.49 -0.3
4,685,316 - Pf6N2E2_4013 0.49 +0.2
4,685,316 - Pf6N2E2_4013 0.49 +1.0
4,685,316 - Pf6N2E2_4013 0.49 +0.8
4,685,316 - Pf6N2E2_4013 0.49 -0.4
4,685,316 - Pf6N2E2_4013 0.49 -0.7
4,685,319 + Pf6N2E2_4013 0.49 -0.6
4,685,319 + Pf6N2E2_4013 0.49 +1.0
4,685,319 + Pf6N2E2_4013 0.49 +1.3
4,685,319 + Pf6N2E2_4013 0.49 +1.3
4,685,319 + Pf6N2E2_4013 0.49 +0.6
4,685,319 + Pf6N2E2_4013 0.49 +0.6
4,685,319 + Pf6N2E2_4013 0.49 +0.1
4,685,319 + Pf6N2E2_4013 0.49 -1.3
4,685,319 + Pf6N2E2_4013 0.49 +1.2
4,685,320 - Pf6N2E2_4013 0.49 -2.1
4,685,320 - Pf6N2E2_4013 0.49 +0.2
4,685,320 - Pf6N2E2_4013 0.49 +0.5
4,685,320 - Pf6N2E2_4013 0.49 +0.6
4,685,320 - Pf6N2E2_4013 0.49 +0.6
4,685,320 - Pf6N2E2_4013 0.49 -0.2
4,685,339 + Pf6N2E2_4013 0.51 +1.3
4,685,451 + Pf6N2E2_4013 0.60 -0.5
4,685,488 + Pf6N2E2_4013 0.63 +0.2
4,685,500 - Pf6N2E2_4013 0.64 -0.5
4,685,500 - Pf6N2E2_4013 0.64 -3.8

Or see this region's nucleotide sequence