Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3497

Experiment: Fusidic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3495 and Pf6N2E2_3496 are separated by 20 nucleotidesPf6N2E2_3496 and Pf6N2E2_3497 are separated by 12 nucleotidesPf6N2E2_3497 and Pf6N2E2_3498 overlap by 4 nucleotidesPf6N2E2_3498 and Pf6N2E2_3499 are separated by 164 nucleotidesPf6N2E2_3499 and Pf6N2E2_3500 are separated by 236 nucleotides Pf6N2E2_3495 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,077,107 to 4,077,661 _3495 Pf6N2E2_3496 - lipoprotein, putative, at 4,077,682 to 4,078,299 _3496 Pf6N2E2_3497 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 4,078,312 to 4,079,061 _3497 Pf6N2E2_3498 - FIG00953349: hypothetical protein, at 4,079,058 to 4,079,363 _3498 Pf6N2E2_3499 - Permeases of the major facilitator superfamily, at 4,079,528 to 4,079,821 _3499 Pf6N2E2_3500 - DNA-damage-inducible protein F, at 4,080,058 to 4,081,407 _3500 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4077.349 kb on - strand, within Pf6N2E2_3495at 4077.349 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.391 kb on - strand, within Pf6N2E2_3495at 4077.522 kb on + strand, within Pf6N2E2_3495at 4077.604 kb on + strand, within Pf6N2E2_3495at 4077.680 kb on - strandat 4077.680 kb on - strandat 4077.848 kb on + strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.849 kb on - strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.875 kb on + strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.876 kb on - strand, within Pf6N2E2_3496at 4077.923 kb on + strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.924 kb on - strand, within Pf6N2E2_3496at 4077.926 kb on + strand, within Pf6N2E2_3496at 4077.926 kb on + strand, within Pf6N2E2_3496at 4077.927 kb on - strand, within Pf6N2E2_3496at 4077.927 kb on - strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.938 kb on + strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4077.939 kb on - strand, within Pf6N2E2_3496at 4078.142 kb on + strand, within Pf6N2E2_3496at 4078.143 kb on - strand, within Pf6N2E2_3496at 4078.232 kb on + strand, within Pf6N2E2_3496at 4078.232 kb on + strand, within Pf6N2E2_3496at 4078.233 kb on - strand, within Pf6N2E2_3496at 4078.233 kb on - strand, within Pf6N2E2_3496at 4078.340 kb on + strandat 4078.341 kb on - strandat 4078.341 kb on - strandat 4078.341 kb on - strandat 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.437 kb on + strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.438 kb on - strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.439 kb on + strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.440 kb on - strand, within Pf6N2E2_3497at 4078.608 kb on - strand, within Pf6N2E2_3497at 4078.628 kb on + strand, within Pf6N2E2_3497at 4078.629 kb on - strand, within Pf6N2E2_3497at 4078.739 kb on + strand, within Pf6N2E2_3497at 4078.739 kb on + strand, within Pf6N2E2_3497at 4078.739 kb on + strand, within Pf6N2E2_3497at 4078.740 kb on - strand, within Pf6N2E2_3497at 4079.010 kb on - strandat 4079.149 kb on + strand, within Pf6N2E2_3498at 4079.149 kb on + strand, within Pf6N2E2_3498at 4079.150 kb on - strand, within Pf6N2E2_3498at 4079.150 kb on - strand, within Pf6N2E2_3498at 4079.384 kb on + strandat 4079.384 kb on + strandat 4079.385 kb on - strandat 4079.475 kb on + strandat 4079.727 kb on - strand, within Pf6N2E2_3499at 4079.727 kb on - strand, within Pf6N2E2_3499at 4079.727 kb on - strand, within Pf6N2E2_3499at 4079.820 kb on - strandat 4079.820 kb on - strandat 4079.820 kb on - strandat 4079.869 kb on + strandat 4079.869 kb on + strandat 4079.869 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.940 kb on + strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.941 kb on - strandat 4079.942 kb on + strandat 4079.942 kb on + strandat 4079.942 kb on + strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4079.943 kb on - strandat 4079.971 kb on + strandat 4080.031 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
remove
4,077,349 - Pf6N2E2_3495 0.44 +0.6
4,077,349 - Pf6N2E2_3495 0.44 +1.1
4,077,391 - Pf6N2E2_3495 0.51 +0.3
4,077,391 - Pf6N2E2_3495 0.51 +0.7
4,077,391 - Pf6N2E2_3495 0.51 -0.3
4,077,522 + Pf6N2E2_3495 0.75 +1.2
4,077,604 + Pf6N2E2_3495 0.90 +0.9
4,077,680 - -1.8
4,077,680 - +0.3
4,077,848 + Pf6N2E2_3496 0.27 +0.8
4,077,849 - Pf6N2E2_3496 0.27 -0.6
4,077,849 - Pf6N2E2_3496 0.27 +0.7
4,077,849 - Pf6N2E2_3496 0.27 -1.0
4,077,875 + Pf6N2E2_3496 0.31 +0.8
4,077,875 + Pf6N2E2_3496 0.31 -0.9
4,077,875 + Pf6N2E2_3496 0.31 +0.2
4,077,875 + Pf6N2E2_3496 0.31 +1.0
4,077,875 + Pf6N2E2_3496 0.31 +0.7
4,077,876 - Pf6N2E2_3496 0.31 -0.3
4,077,876 - Pf6N2E2_3496 0.31 +1.3
4,077,876 - Pf6N2E2_3496 0.31 +1.0
4,077,876 - Pf6N2E2_3496 0.31 +0.5
4,077,923 + Pf6N2E2_3496 0.39 -1.1
4,077,924 - Pf6N2E2_3496 0.39 -0.6
4,077,924 - Pf6N2E2_3496 0.39 -0.1
4,077,924 - Pf6N2E2_3496 0.39 +0.2
4,077,926 + Pf6N2E2_3496 0.39 -1.4
4,077,926 + Pf6N2E2_3496 0.39 +0.4
4,077,927 - Pf6N2E2_3496 0.40 -0.1
4,077,927 - Pf6N2E2_3496 0.40 +0.4
4,077,938 + Pf6N2E2_3496 0.41 +0.1
4,077,938 + Pf6N2E2_3496 0.41 -0.5
4,077,938 + Pf6N2E2_3496 0.41 -1.0
4,077,938 + Pf6N2E2_3496 0.41 +0.2
4,077,938 + Pf6N2E2_3496 0.41 +0.1
4,077,938 + Pf6N2E2_3496 0.41 -0.1
4,077,938 + Pf6N2E2_3496 0.41 +1.6
4,077,938 + Pf6N2E2_3496 0.41 +0.9
4,077,939 - Pf6N2E2_3496 0.42 -1.3
4,077,939 - Pf6N2E2_3496 0.42 +0.0
4,077,939 - Pf6N2E2_3496 0.42 -1.6
4,077,939 - Pf6N2E2_3496 0.42 +0.3
4,078,142 + Pf6N2E2_3496 0.74 -0.8
4,078,143 - Pf6N2E2_3496 0.75 +0.7
4,078,232 + Pf6N2E2_3496 0.89 +0.2
4,078,232 + Pf6N2E2_3496 0.89 -1.0
4,078,233 - Pf6N2E2_3496 0.89 +1.6
4,078,233 - Pf6N2E2_3496 0.89 +0.1
4,078,340 + +1.2
4,078,341 - +0.4
4,078,341 - +0.7
4,078,341 - +0.9
4,078,437 + Pf6N2E2_3497 0.17 +0.8
4,078,437 + Pf6N2E2_3497 0.17 +0.7
4,078,437 + Pf6N2E2_3497 0.17 +1.5
4,078,437 + Pf6N2E2_3497 0.17 -0.2
4,078,438 - Pf6N2E2_3497 0.17 +0.8
4,078,438 - Pf6N2E2_3497 0.17 +0.9
4,078,438 - Pf6N2E2_3497 0.17 +0.6
4,078,438 - Pf6N2E2_3497 0.17 +2.9
4,078,438 - Pf6N2E2_3497 0.17 +1.0
4,078,438 - Pf6N2E2_3497 0.17 +1.8
4,078,439 + Pf6N2E2_3497 0.17 +1.2
4,078,439 + Pf6N2E2_3497 0.17 -0.7
4,078,439 + Pf6N2E2_3497 0.17 -0.3
4,078,439 + Pf6N2E2_3497 0.17 +1.2
4,078,439 + Pf6N2E2_3497 0.17 +0.3
4,078,439 + Pf6N2E2_3497 0.17 +0.9
4,078,439 + Pf6N2E2_3497 0.17 +0.7
4,078,439 + Pf6N2E2_3497 0.17 +0.4
4,078,439 + Pf6N2E2_3497 0.17 +1.2
4,078,439 + Pf6N2E2_3497 0.17 +0.5
4,078,439 + Pf6N2E2_3497 0.17 +1.5
4,078,440 - Pf6N2E2_3497 0.17 +1.7
4,078,440 - Pf6N2E2_3497 0.17 +0.2
4,078,440 - Pf6N2E2_3497 0.17 -0.1
4,078,440 - Pf6N2E2_3497 0.17 -0.3
4,078,440 - Pf6N2E2_3497 0.17 +0.7
4,078,440 - Pf6N2E2_3497 0.17 +1.2
4,078,440 - Pf6N2E2_3497 0.17 -1.4
4,078,440 - Pf6N2E2_3497 0.17 +0.7
4,078,440 - Pf6N2E2_3497 0.17 +1.8
4,078,440 - Pf6N2E2_3497 0.17 -1.2
4,078,440 - Pf6N2E2_3497 0.17 +0.9
4,078,440 - Pf6N2E2_3497 0.17 +1.2
4,078,440 - Pf6N2E2_3497 0.17 +1.4
4,078,440 - Pf6N2E2_3497 0.17 -0.6
4,078,440 - Pf6N2E2_3497 0.17 +1.6
4,078,440 - Pf6N2E2_3497 0.17 +0.5
4,078,440 - Pf6N2E2_3497 0.17 +0.3
4,078,440 - Pf6N2E2_3497 0.17 +1.2
4,078,608 - Pf6N2E2_3497 0.39 +1.6
4,078,628 + Pf6N2E2_3497 0.42 +0.4
4,078,629 - Pf6N2E2_3497 0.42 -0.8
4,078,739 + Pf6N2E2_3497 0.57 -0.4
4,078,739 + Pf6N2E2_3497 0.57 +1.0
4,078,739 + Pf6N2E2_3497 0.57 +0.7
4,078,740 - Pf6N2E2_3497 0.57 +0.5
4,079,010 - -0.0
4,079,149 + Pf6N2E2_3498 0.30 +0.5
4,079,149 + Pf6N2E2_3498 0.30 +1.3
4,079,150 - Pf6N2E2_3498 0.30 +0.7
4,079,150 - Pf6N2E2_3498 0.30 -0.7
4,079,384 + +1.0
4,079,384 + -0.4
4,079,385 - +1.3
4,079,475 + +0.3
4,079,727 - Pf6N2E2_3499 0.68 -0.7
4,079,727 - Pf6N2E2_3499 0.68 -0.3
4,079,727 - Pf6N2E2_3499 0.68 +0.8
4,079,820 - -2.1
4,079,820 - -2.1
4,079,820 - +0.8
4,079,869 + +0.5
4,079,869 + -1.0
4,079,869 + -0.4
4,079,940 + -0.2
4,079,940 + +1.1
4,079,940 + +0.4
4,079,940 + +0.2
4,079,940 + +0.7
4,079,940 + -0.1
4,079,940 + +0.2
4,079,940 + +0.8
4,079,940 + -0.1
4,079,941 - -0.1
4,079,941 - -2.0
4,079,941 - -0.3
4,079,941 - +0.3
4,079,941 - -0.6
4,079,941 - +0.3
4,079,941 - +0.4
4,079,941 - +0.5
4,079,941 - -0.7
4,079,941 - +0.6
4,079,941 - -0.3
4,079,942 + -0.6
4,079,942 + +1.3
4,079,942 + -1.4
4,079,943 - +1.1
4,079,943 - +0.6
4,079,943 - +0.3
4,079,943 - +0.0
4,079,943 - -0.0
4,079,943 - -0.8
4,079,971 + -1.0
4,080,031 - -0.2

Or see this region's nucleotide sequence