Strain Fitness in Pantoea sp. MT58 around IAI47_17075

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,621,176	-				+0.1
3,621,176	-				-2.9
3,621,176	-				-1.6
3,621,186	-				-1.6
3,621,189	-				+0.1
3,621,189	-				-2.7
3,621,189	-				-1.0
3,621,189	-				-2.7
3,621,189	-				-2.1
3,621,191	-				-1.7
3,621,191	-				-2.3
3,621,191	-				-1.6
3,621,191	-				+1.4
3,621,191	-				-1.6
3,621,191	-				-1.0
3,621,191	-				+0.1
3,621,191	-				-1.3
3,621,191	-				-1.5
3,621,191	-				-2.0
3,621,191	-				-1.2
3,621,202	-				-0.8
3,621,202	-				-1.5
3,621,202	-				+0.4
3,621,202	-				-1.7
3,621,202	-				-2.8
3,621,202	-				-0.4
3,621,248	+				-2.8
3,621,249	-				-1.5
3,621,249	-				-1.0
3,621,907	-				+0.5
3,621,943	-				+0.2
3,621,943	-				+2.1
3,621,943	-				-1.3
3,621,960	-				-1.3
3,621,991	-				-0.9
3,622,014	-				-1.5
3,622,014	-				-1.0
3,622,014	-				+1.5
3,622,068	-		IAI47_17075	0.22	-0.1
3,622,148	-		IAI47_17075	0.50	+3.1
3,622,148	-		IAI47_17075	0.50	-1.0
3,622,148	-		IAI47_17075	0.50	-0.8
3,622,197	-		IAI47_17075	0.66	-1.0
3,622,226	-		IAI47_17075	0.76	+4.2
3,622,226	-		IAI47_17075	0.76	-1.5
3,622,226	-		IAI47_17075	0.76	-1.0
3,622,226	-		IAI47_17075	0.76	+0.9
3,622,226	-		IAI47_17075	0.76	+1.7
3,622,226	-		IAI47_17075	0.76	+2.2
3,622,226	-		IAI47_17075	0.76	-0.7
3,622,226	-		IAI47_17075	0.76	-1.2
3,622,255	-		IAI47_17075	0.86	-1.3
3,622,266	-				-0.2
3,622,294	-				+1.0
3,622,294	-				-1.8
3,622,294	-				+0.8
3,622,322	-				+0.1
3,622,322	-				+0.7
3,622,322	-				+0.8
3,622,322	-				+1.9
3,622,322	-				-2.5
3,622,331	-				-0.2
3,622,331	-				+2.4
3,622,331	-				+0.9
3,622,364	-				-0.4
3,622,376	-				+1.6
3,622,392	+				-0.8
3,622,392	+				-2.5
3,622,392	+				-0.4
3,622,393	-				+0.9
3,622,393	-				-0.8
3,622,393	-				+0.8
3,622,393	-				+1.1
3,622,393	-				-0.1
3,622,393	-				-1.2
3,622,403	+				-2.3
3,622,403	+				-2.4
3,622,404	-				+1.8
3,622,404	-				+0.5
3,622,404	-				+0.5
3,622,404	-				+1.2
3,622,404	-				+2.9
3,622,404	-				+2.1
3,622,404	-				+2.5
3,622,404	-				+2.2
3,622,404	-				-1.7
3,622,410	-				+1.5
3,622,410	-				+0.9
3,622,430	+				+0.7
3,622,431	-				+1.4
3,622,455	+		IAI47_17080	0.11	-0.5
3,622,455	+		IAI47_17080	0.11	-1.6
3,622,456	-		IAI47_17080	0.11	-0.9
3,622,456	-		IAI47_17080	0.11	-0.2
3,622,456	-		IAI47_17080	0.11	-1.3
3,622,456	-		IAI47_17080	0.11	+2.5
3,622,461	+		IAI47_17080	0.12	-0.2
3,622,462	-		IAI47_17080	0.13	-0.0
3,622,534	-		IAI47_17080	0.28	-0.8
3,622,561	-		IAI47_17080	0.33	-0.6
3,622,565	+		IAI47_17080	0.34	-1.0
3,622,565	+		IAI47_17080	0.34	-3.4
3,622,566	-		IAI47_17080	0.34	-0.5
3,622,566	-		IAI47_17080	0.34	-0.4
3,622,598	-		IAI47_17080	0.41	+0.2
3,622,695	+		IAI47_17080	0.61	+0.2
3,622,695	+		IAI47_17080	0.61	+0.0
3,622,695	+		IAI47_17080	0.61	-1.3
3,622,695	+		IAI47_17080	0.61	-0.8
3,622,695	+		IAI47_17080	0.61	-2.0
3,622,696	-		IAI47_17080	0.62	+0.4
3,622,696	-		IAI47_17080	0.62	-0.9
3,622,736	+		IAI47_17080	0.70	-2.0
3,622,737	-		IAI47_17080	0.70	+1.4
3,622,737	-		IAI47_17080	0.70	+0.3
3,622,737	-		IAI47_17080	0.70	+1.2
3,622,753	+		IAI47_17080	0.74	-1.1
3,622,783	-		IAI47_17080	0.80	-0.2
3,622,791	+		IAI47_17080	0.82	-1.0
3,622,792	-		IAI47_17080	0.82	-2.2
3,622,855	+				-1.3
3,622,856	-				+3.5
3,622,856	-				-0.0
3,622,880	+				-1.8
3,622,880	+				-0.5
3,622,881	-				+0.0
3,622,881	-				+1.0
3,622,881	-				-0.5
3,622,881	-				+2.2
3,622,881	-				-1.0
3,622,905	-				+1.3
3,622,956	+				-0.4
3,622,957	-				-0.5
3,622,957	-				+0.1
3,622,957	-				-0.8
3,622,974	-				-0.6
3,623,029	+				-1.5
3,623,030	-				+0.4
3,623,033	+				-0.1
3,623,033	+				-1.9
3,623,033	+				-0.4
3,623,033	+				-2.2
3,623,033	+				-2.4
3,623,033	+				-1.1
3,623,033	+				-0.2
3,623,033	+				-1.4
3,623,034	-				+3.9
3,623,034	-				-1.5
3,623,034	-				-0.6
3,623,034	-				-1.0
3,623,034	-				+0.5
3,623,034	-				-0.2
3,623,034	-				+0.1
3,623,034	-				-0.9
3,623,034	-				+1.7
3,623,034	-				+0.1
3,623,067	+				-0.1
3,623,067	+				-1.5
3,623,068	-				+0.4
3,623,089	+				-0.9
3,623,089	+				+1.7
3,623,089	+				+1.0
3,623,090	-				-1.6
3,623,090	-				+0.3
3,623,090	-				-0.3
3,623,090	-				+2.1
3,623,090	-				-0.6
3,623,090	-				+1.7
3,623,090	-				-1.6
3,623,090	-				-0.0
3,623,090	-				+0.9
3,623,090	-				-0.6
3,623,092	+				+0.8
3,623,092	+				+1.8
3,623,092	+				+0.5
3,623,093	-				-0.5
3,623,094	-				-0.1
3,623,115	+				+0.6
3,623,126	+				+1.4
3,623,126	+				-2.3
3,623,127	-				-0.2
3,623,127	-				+1.0
3,623,147	+				+0.5
3,623,148	-				+0.7
3,623,155	+				+0.5
3,623,155	+				+0.6
3,623,155	+				-0.2
3,623,155	+				+1.5
3,623,156	-				+0.5
3,623,156	-				-0.2
3,623,156	-				+0.7
3,623,156	-				-1.5
3,623,156	-				-1.0
3,623,156	-				-0.3
3,623,168	+				+0.5
3,623,168	+				+0.1
3,623,168	+				-2.2
3,623,168	+				+0.8
3,623,168	+				+3.1
3,623,168	+				+1.6
3,623,168	+				-0.5
3,623,168	+				-1.0
3,623,169	-				-0.7
3,623,169	-				+0.9
3,623,202	+				-0.1
3,623,202	+				+0.1
3,623,202	+				-0.5
3,623,202	+				-0.6
3,623,202	+				+0.3
3,623,202	+				+4.0
3,623,202	+				-2.2
3,623,202	+				-0.0
3,623,202	+				+0.3
3,623,202	+				-0.6
3,623,202	+				+4.5
3,623,203	-				-0.7
3,623,203	-				+0.2
3,623,203	-				-1.1
3,623,203	-				-0.5
3,623,203	-				-1.0
3,623,203	-				-0.6
3,623,203	-				-0.8
3,623,211	+				+0.5
3,623,212	-				+0.3
3,623,212	-				-0.3
3,623,280	+		IAI47_17085	0.11	-0.0
3,623,281	-		IAI47_17085	0.11	-0.3
3,623,281	-		IAI47_17085	0.11	-1.3
3,623,281	-		IAI47_17085	0.11	-0.5
3,623,281	-		IAI47_17085	0.11	+2.2