Strain Fitness in Pantoea sp. MT58 around IAI47_14850

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,131,320	-				-2.4
3,131,320	-				+2.9
3,131,402	-		IAI47_14845	0.15	-1.2
3,131,413	+		IAI47_14845	0.16	+0.3
3,131,413	+		IAI47_14845	0.16	-1.4
3,131,416	+		IAI47_14845	0.16	-2.1
3,131,416	+		IAI47_14845	0.16	+0.1
3,131,416	+		IAI47_14845	0.16	-0.0
3,131,416	+		IAI47_14845	0.16	+0.1
3,131,421	+		IAI47_14845	0.17	+0.9
3,131,421	+		IAI47_14845	0.17	-1.0
3,131,422	-		IAI47_14845	0.17	+0.2
3,131,422	-		IAI47_14845	0.17	-0.2
3,131,427	+		IAI47_14845	0.17	+0.1
3,131,427	+		IAI47_14845	0.17	+0.5
3,131,427	+		IAI47_14845	0.17	-1.2
3,131,427	+		IAI47_14845	0.17	+0.2
3,131,427	+		IAI47_14845	0.17	-0.1
3,131,427	+		IAI47_14845	0.17	+0.8
3,131,428	-		IAI47_14845	0.17	-0.2
3,131,428	-		IAI47_14845	0.17	+1.4
3,131,428	-		IAI47_14845	0.17	+1.7
3,131,428	-		IAI47_14845	0.17	+0.5
3,131,464	+		IAI47_14845	0.21	+0.9
3,131,465	-		IAI47_14845	0.21	+0.8
3,131,465	-		IAI47_14845	0.21	+0.8
3,131,465	-		IAI47_14845	0.21	-0.6
3,131,523	-		IAI47_14845	0.28	-0.2
3,131,618	+		IAI47_14845	0.38	+0.4
3,131,619	-		IAI47_14845	0.38	+1.0
3,131,645	+		IAI47_14845	0.41	+1.5
3,131,645	+		IAI47_14845	0.41	+0.5
3,131,645	+		IAI47_14845	0.41	+0.6
3,131,645	+		IAI47_14845	0.41	-0.9
3,131,646	-		IAI47_14845	0.41	+0.8
3,131,646	-		IAI47_14845	0.41	+1.1
3,131,689	+		IAI47_14845	0.46	+0.4
3,131,689	+		IAI47_14845	0.46	-1.9
3,131,689	+		IAI47_14845	0.46	-0.8
3,131,689	+		IAI47_14845	0.46	-0.1
3,131,689	+		IAI47_14845	0.46	-0.4
3,131,690	-		IAI47_14845	0.46	+2.2
3,131,697	+		IAI47_14845	0.47	+0.9
3,131,697	+		IAI47_14845	0.47	-1.9
3,132,050	-		IAI47_14845	0.85	+0.7
3,132,073	+		IAI47_14845	0.88	-0.6
3,132,073	+		IAI47_14845	0.88	+1.1
3,132,073	+		IAI47_14845	0.88	-0.4
3,132,073	+		IAI47_14845	0.88	-0.0
3,132,073	+		IAI47_14845	0.88	+0.3
3,132,073	+		IAI47_14845	0.88	-1.2
3,132,073	+		IAI47_14845	0.88	+2.0
3,132,073	+		IAI47_14845	0.88	-1.2
3,132,073	+		IAI47_14845	0.88	+0.2
3,132,073	+		IAI47_14845	0.88	-0.2
3,132,074	-		IAI47_14845	0.88	-0.8
3,132,074	-		IAI47_14845	0.88	+0.8
3,132,074	-		IAI47_14845	0.88	-0.7
3,132,074	-		IAI47_14845	0.88	+0.0
3,132,074	-		IAI47_14845	0.88	-0.9
3,132,078	+		IAI47_14845	0.88	-0.9
3,132,078	+		IAI47_14845	0.88	+0.0
3,132,079	-		IAI47_14845	0.88	+1.4
3,132,088	+		IAI47_14845	0.89	-0.2
3,132,088	+		IAI47_14845	0.89	+0.6
3,132,088	+		IAI47_14845	0.89	+1.2
3,132,088	+		IAI47_14845	0.89	-2.1
3,132,089	-		IAI47_14845	0.89	+0.4
3,132,089	-		IAI47_14845	0.89	+1.9
3,132,089	-		IAI47_14845	0.89	-0.0
3,132,089	-		IAI47_14845	0.89	+0.5
3,132,160	+				-0.1
3,132,160	+				-1.7
3,132,161	-				+1.4
3,132,171	-				+0.4
3,132,263	+				-0.3
3,132,263	+				+0.1
3,132,263	+				+1.0
3,132,264	-				-1.9
3,132,270	-				+0.1
3,132,343	-		IAI47_14850	0.10	+0.5
3,132,389	+		IAI47_14850	0.14	+1.4
3,132,389	+		IAI47_14850	0.14	-2.8
3,132,400	+		IAI47_14850	0.15	+0.9
3,132,425	+		IAI47_14850	0.17	+1.8
3,132,425	+		IAI47_14850	0.17	+3.0
3,132,425	+		IAI47_14850	0.17	+0.8
3,132,425	+		IAI47_14850	0.17	+0.1
3,132,425	+		IAI47_14850	0.17	+0.2
3,132,425	+		IAI47_14850	0.17	-1.0
3,132,425	+		IAI47_14850	0.17	+0.1
3,132,425	+		IAI47_14850	0.17	-0.2
3,132,426	-		IAI47_14850	0.17	+0.3
3,132,426	-		IAI47_14850	0.17	-1.1
3,132,426	-		IAI47_14850	0.17	+0.1
3,132,426	-		IAI47_14850	0.17	-0.6
3,132,426	-		IAI47_14850	0.17	-0.1
3,132,426	-		IAI47_14850	0.17	+1.3
3,132,426	-		IAI47_14850	0.17	-2.2
3,132,441	-		IAI47_14850	0.18	+0.3
3,132,500	+		IAI47_14850	0.22	-0.6
3,132,500	+		IAI47_14850	0.22	-0.9
3,132,500	+		IAI47_14850	0.22	+2.1
3,132,501	-		IAI47_14850	0.22	+0.9
3,132,531	+		IAI47_14850	0.25	-2.4
3,132,532	-		IAI47_14850	0.25	-0.7
3,132,541	+		IAI47_14850	0.25	+0.7
3,132,542	-		IAI47_14850	0.25	-0.4
3,132,542	-		IAI47_14850	0.25	-0.1
3,132,557	+		IAI47_14850	0.27	-1.1
3,132,557	+		IAI47_14850	0.27	+0.7
3,132,558	-		IAI47_14850	0.27	-0.3
3,132,558	-		IAI47_14850	0.27	-0.6
3,132,558	-		IAI47_14850	0.27	+0.4
3,132,558	-		IAI47_14850	0.27	-0.8
3,132,558	-		IAI47_14850	0.27	-0.5
3,132,558	-		IAI47_14850	0.27	+0.1
3,132,558	-		IAI47_14850	0.27	+0.6
3,132,620	+		IAI47_14850	0.31	-0.6
3,132,639	+		IAI47_14850	0.33	-1.5
3,132,639	+		IAI47_14850	0.33	+0.0
3,132,640	-		IAI47_14850	0.33	+0.2
3,132,764	+		IAI47_14850	0.42	-0.4
3,132,765	-		IAI47_14850	0.42	-1.0
3,132,847	+		IAI47_14850	0.49	-2.1
3,132,848	-		IAI47_14850	0.49	+0.7
3,132,872	+		IAI47_14850	0.51	+2.4
3,132,873	-		IAI47_14850	0.51	+0.9
3,132,873	-		IAI47_14850	0.51	-1.0
3,132,873	-		IAI47_14850	0.51	-0.3
3,132,876	+		IAI47_14850	0.51	-1.0
3,132,876	+		IAI47_14850	0.51	+0.9
3,132,876	+		IAI47_14850	0.51	+0.4
3,132,876	+		IAI47_14850	0.51	+0.8
3,132,877	-		IAI47_14850	0.51	+0.1
3,132,877	-		IAI47_14850	0.51	+2.4
3,132,877	-		IAI47_14850	0.51	+1.0
3,132,905	+		IAI47_14850	0.53	-1.4
3,133,057	+		IAI47_14850	0.65	+0.5
3,133,057	+		IAI47_14850	0.65	+1.3
3,133,058	-		IAI47_14850	0.65	+0.9
3,133,106	+		IAI47_14850	0.68	+1.0
3,133,106	+		IAI47_14850	0.68	+0.6
3,133,106	+		IAI47_14850	0.68	-0.1
3,133,106	+		IAI47_14850	0.68	-0.4
3,133,151	+		IAI47_14850	0.72	+0.1
3,133,163	+		IAI47_14850	0.73	-0.3
3,133,163	+		IAI47_14850	0.73	-1.6
3,133,164	-		IAI47_14850	0.73	+0.9
3,133,282	+		IAI47_14850	0.82	-0.3
3,133,282	+		IAI47_14850	0.82	-0.5
3,133,282	+		IAI47_14850	0.82	+0.3
3,133,283	-		IAI47_14850	0.82	+1.7
3,133,283	-		IAI47_14850	0.82	-1.6
3,133,283	-		IAI47_14850	0.82	+1.0
3,133,291	+		IAI47_14850	0.82	+0.1
3,133,291	+		IAI47_14850	0.82	-2.4
3,133,291	+		IAI47_14850	0.82	+0.9
3,133,291	+		IAI47_14850	0.82	+1.5
3,133,292	-		IAI47_14850	0.83	+0.1
3,133,292	-		IAI47_14850	0.83	-0.1
3,133,292	-		IAI47_14850	0.83	+2.1
3,133,389	+				+1.1
3,133,389	+				+1.6
3,133,492	-				-0.7
3,133,492	-				+3.2
3,133,492	-				-0.4
3,133,492	-				+0.1
3,133,523	+				-0.4
3,133,537	-				+0.9
3,133,580	+				+0.1
3,133,580	+				+0.0
3,133,580	+				-0.6
3,133,580	+				-0.9
3,133,580	+				+0.8
3,133,580	+				-1.0
3,133,581	-				-1.2
3,133,581	-				-0.7
3,133,581	-				+1.1
3,133,581	-				-0.1
3,133,616	-		IAI47_14855	0.12	+0.8
3,133,619	+		IAI47_14855	0.12	-0.4
3,133,620	-		IAI47_14855	0.12	-0.7
3,133,659	+		IAI47_14855	0.18	-0.6
3,133,659	+		IAI47_14855	0.18	-0.0
3,133,659	+		IAI47_14855	0.18	+1.1
3,133,659	+		IAI47_14855	0.18	+0.5
3,133,659	+		IAI47_14855	0.18	-1.1
3,133,659	+		IAI47_14855	0.18	-1.0
3,133,659	+		IAI47_14855	0.18	+2.1
3,133,659	+		IAI47_14855	0.18	-0.6
3,133,660	-		IAI47_14855	0.18	+0.1
3,133,660	-		IAI47_14855	0.18	-1.4
3,133,660	-		IAI47_14855	0.18	-0.4
3,133,660	-		IAI47_14855	0.18	+0.9
3,133,660	-		IAI47_14855	0.18	+0.6
3,133,704	+		IAI47_14855	0.24	+0.0
3,133,704	+		IAI47_14855	0.24	-0.8
3,133,705	-		IAI47_14855	0.25	-1.9
3,133,705	-		IAI47_14855	0.25	-0.4
3,133,705	-		IAI47_14855	0.25	-0.1
3,133,705	-		IAI47_14855	0.25	+1.1
3,133,705	-		IAI47_14855	0.25	+0.4
3,133,705	-		IAI47_14855	0.25	+0.0
3,133,705	-		IAI47_14855	0.25	+1.0
3,133,706	+		IAI47_14855	0.25	-0.2
3,133,706	+		IAI47_14855	0.25	-0.7
3,133,707	-		IAI47_14855	0.25	+0.2
3,133,707	-		IAI47_14855	0.25	-0.4
3,133,707	-		IAI47_14855	0.25	+0.1
3,133,726	+		IAI47_14855	0.28	-0.0
3,133,726	+		IAI47_14855	0.28	-2.1
3,133,726	+		IAI47_14855	0.28	+0.9
3,133,727	-		IAI47_14855	0.28	-0.3
3,133,727	-		IAI47_14855	0.28	-1.2
3,133,727	-		IAI47_14855	0.28	-2.2
3,133,744	+		IAI47_14855	0.30	+0.4
3,133,744	+		IAI47_14855	0.30	-0.9
3,133,744	+		IAI47_14855	0.30	-0.0
3,133,744	+		IAI47_14855	0.30	-0.8
3,133,745	-		IAI47_14855	0.30	-0.5
3,133,745	-		IAI47_14855	0.30	+0.2
3,133,745	-		IAI47_14855	0.30	-1.4
3,133,745	-		IAI47_14855	0.30	-0.5
3,133,745	-		IAI47_14855	0.30	-0.9
3,133,746	+		IAI47_14855	0.31	-0.4
3,133,746	+		IAI47_14855	0.31	+0.5
3,133,746	+		IAI47_14855	0.31	-1.7
3,133,746	+		IAI47_14855	0.31	+1.1
3,133,858	+		IAI47_14855	0.47	-0.7
3,133,858	+		IAI47_14855	0.47	-0.2
3,133,859	-		IAI47_14855	0.47	+0.6
3,133,859	-		IAI47_14855	0.47	-0.7
3,133,877	-		IAI47_14855	0.50	+1.1
3,133,877	-		IAI47_14855	0.50	-1.2
3,133,915	+		IAI47_14855	0.55	+0.7
3,133,915	+		IAI47_14855	0.55	+1.0
3,133,915	+		IAI47_14855	0.55	+0.3
3,133,915	+		IAI47_14855	0.55	-1.5
3,133,916	-		IAI47_14855	0.55	-0.4
3,133,916	-		IAI47_14855	0.55	+0.2
3,133,916	-		IAI47_14855	0.55	+1.5
3,133,920	+		IAI47_14855	0.56	-0.5
3,133,920	+		IAI47_14855	0.56	-1.9
3,133,920	+		IAI47_14855	0.56	-0.9
3,133,921	-		IAI47_14855	0.56	-2.3
3,133,921	-		IAI47_14855	0.56	+0.7
3,133,921	-		IAI47_14855	0.56	-0.8
3,134,033	-		IAI47_14855	0.72	+1.1
3,134,041	+		IAI47_14855	0.73	-0.4
3,134,057	+		IAI47_14855	0.76	+0.1
3,134,057	+		IAI47_14855	0.76	+0.9
3,134,057	+		IAI47_14855	0.76	+0.0
3,134,058	-		IAI47_14855	0.76	-1.5
3,134,058	-		IAI47_14855	0.76	+0.7
3,134,058	-		IAI47_14855	0.76	+0.4
3,134,058	-		IAI47_14855	0.76	-0.9
3,134,121	+		IAI47_14855	0.85	+0.9
3,134,121	+		IAI47_14855	0.85	-0.7
3,134,122	-		IAI47_14855	0.85	-1.7
3,134,122	-		IAI47_14855	0.85	+1.1
3,134,122	-		IAI47_14855	0.85	-0.4
3,134,122	-		IAI47_14855	0.85	+1.9
3,134,122	-		IAI47_14855	0.85	-1.0
3,134,145	+		IAI47_14855	0.88	+1.0
3,134,146	-		IAI47_14855	0.89	+0.8
3,134,146	-		IAI47_14855	0.89	-0.1
3,134,146	-		IAI47_14855	0.89	-1.5
3,134,146	-		IAI47_14855	0.89	+0.3
3,134,218	+				+0.3
3,134,218	+				-1.4
3,134,218	+				+1.2
3,134,219	-				+0.2
3,134,225	+				-1.4
3,134,225	+				+0.1
3,134,226	-				+0.2
3,134,228	+				+1.1
3,134,228	+				-2.5
3,134,228	+				-0.6
3,134,228	+				-1.6
3,134,229	-				+1.0
3,134,229	-				-0.8
3,134,229	-				-0.3
3,134,229	-				-0.8
3,134,229	-				-0.2
3,134,229	-				+2.1
3,134,241	+				-0.7
3,134,241	+				-0.8
3,134,241	+				+3.7
3,134,241	+				-0.4
3,134,241	+				-1.2
3,134,241	+				+0.3
3,134,242	-				+1.1
3,134,242	-				+1.3
3,134,242	-				+2.1
3,134,242	-				-0.9
3,134,274	+				-1.0
3,134,274	+				-0.7
3,134,274	+				-0.2
3,134,274	+				-0.9
3,134,274	+				+2.0
3,134,275	-				+0.5
3,134,275	-				-0.1
3,134,298	+				+0.5
3,134,299	-				-0.6
3,134,309	+				+0.9
3,134,309	+				-0.6
3,134,321	-				-0.7
3,134,340	+				-1.0
3,134,340	+				-0.7
3,134,341	-				+0.9
3,134,341	-				-0.6
3,134,341	-				-0.1
3,134,341	-				+3.3
3,134,384	+				+0.4
3,134,384	+				+0.4
3,134,384	+				+1.7
3,134,385	-				-0.0
3,134,385	-				-2.3
3,134,386	+				+1.6
3,134,387	-				+0.2
3,134,387	-				+0.1
3,134,436	+				-1.1
3,134,436	+				-1.5
3,134,437	-				+0.0
3,134,467	+				-0.2
3,134,467	+				+0.0