Strain Fitness in Pantoea sp. MT58 around IAI47_09545

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,016,589	+		IAI47_09540	0.31	+1.8
2,016,589	+		IAI47_09540	0.31	+0.8
2,016,590	-		IAI47_09540	0.31	+0.9
2,016,590	-		IAI47_09540	0.31	+0.8
2,016,657	+		IAI47_09540	0.36	+0.6
2,016,657	+		IAI47_09540	0.36	+1.0
2,016,657	+		IAI47_09540	0.36	-0.3
2,016,695	+		IAI47_09540	0.39	+0.2
2,016,695	+		IAI47_09540	0.39	-1.2
2,016,695	+		IAI47_09540	0.39	+0.2
2,016,695	+		IAI47_09540	0.39	+1.2
2,016,696	-		IAI47_09540	0.39	+0.7
2,016,696	-		IAI47_09540	0.39	+2.6
2,016,696	-		IAI47_09540	0.39	+2.5
2,016,696	-		IAI47_09540	0.39	-0.3
2,016,696	-		IAI47_09540	0.39	+1.2
2,016,713	-		IAI47_09540	0.40	-0.9
2,016,713	-		IAI47_09540	0.40	-1.0
2,016,788	-		IAI47_09540	0.46	-0.9
2,016,863	-		IAI47_09540	0.52	+0.4
2,016,870	+		IAI47_09540	0.52	+1.0
2,016,870	+		IAI47_09540	0.52	+0.8
2,016,871	-		IAI47_09540	0.53	+1.0
2,016,871	-		IAI47_09540	0.53	+2.2
2,016,876	+		IAI47_09540	0.53	+1.2
2,016,876	+		IAI47_09540	0.53	+1.8
2,016,927	+		IAI47_09540	0.57	+0.8
2,016,927	+		IAI47_09540	0.57	-0.4
2,016,928	-		IAI47_09540	0.57	-0.4
2,016,928	-		IAI47_09540	0.57	+1.3
2,016,946	+		IAI47_09540	0.58	-1.0
2,016,946	+		IAI47_09540	0.58	+0.2
2,016,946	+		IAI47_09540	0.58	-0.0
2,016,946	+		IAI47_09540	0.58	+1.8
2,016,946	+		IAI47_09540	0.58	-0.7
2,016,946	+		IAI47_09540	0.58	-1.4
2,016,946	+		IAI47_09540	0.58	-2.3
2,016,946	+		IAI47_09540	0.58	-0.4
2,016,946	+		IAI47_09540	0.58	-1.8
2,016,946	+		IAI47_09540	0.58	-0.3
2,016,946	+		IAI47_09540	0.58	+0.4
2,016,946	+		IAI47_09540	0.58	+0.6
2,016,946	+		IAI47_09540	0.58	-0.9
2,016,946	+		IAI47_09540	0.58	-1.0
2,016,946	+		IAI47_09540	0.58	-0.2
2,016,947	-		IAI47_09540	0.58	+1.1
2,016,947	-		IAI47_09540	0.58	+1.4
2,016,947	-		IAI47_09540	0.58	+0.8
2,016,947	-		IAI47_09540	0.58	-0.8
2,016,947	-		IAI47_09540	0.58	+0.2
2,016,947	-		IAI47_09540	0.58	+0.8
2,016,947	-		IAI47_09540	0.58	+2.3
2,016,947	-		IAI47_09540	0.58	-1.5
2,016,947	-		IAI47_09540	0.58	+0.2
2,016,947	-		IAI47_09540	0.58	-0.0
2,016,947	-		IAI47_09540	0.58	-1.0
2,017,057	-		IAI47_09540	0.67	+1.4
2,017,057	-		IAI47_09540	0.67	+1.7
2,017,057	-		IAI47_09540	0.67	+0.9
2,017,074	+		IAI47_09540	0.68	+0.4
2,017,101	-		IAI47_09540	0.70	-0.7
2,017,110	-		IAI47_09540	0.71	-0.2
2,017,136	+		IAI47_09540	0.73	+0.4
2,017,136	+		IAI47_09540	0.73	+1.9
2,017,136	+		IAI47_09540	0.73	-0.6
2,017,136	+		IAI47_09540	0.73	-1.7
2,017,137	-		IAI47_09540	0.73	-0.6
2,017,137	-		IAI47_09540	0.73	+0.2
2,017,137	-		IAI47_09540	0.73	-0.3
2,017,137	-		IAI47_09540	0.73	+4.2
2,017,137	-		IAI47_09540	0.73	+1.6
2,017,137	-		IAI47_09540	0.73	-0.0
2,017,137	-		IAI47_09540	0.73	-0.2
2,017,137	-		IAI47_09540	0.73	+1.3
2,017,137	-		IAI47_09540	0.73	+0.3
2,017,137	-		IAI47_09540	0.73	+0.2
2,017,152	+		IAI47_09540	0.74	+0.4
2,017,152	+		IAI47_09540	0.74	-0.7
2,017,152	+		IAI47_09540	0.74	-0.7
2,017,152	+		IAI47_09540	0.74	+0.3
2,017,152	+		IAI47_09540	0.74	+0.0
2,017,153	-		IAI47_09540	0.74	+0.1
2,017,153	-		IAI47_09540	0.74	-0.1
2,017,153	-		IAI47_09540	0.74	-0.6
2,017,169	+		IAI47_09540	0.75	-0.5
2,017,169	+		IAI47_09540	0.75	+0.7
2,017,169	+		IAI47_09540	0.75	-0.3
2,017,169	+		IAI47_09540	0.75	+0.5
2,017,170	-		IAI47_09540	0.75	+0.4
2,017,170	-		IAI47_09540	0.75	+0.7
2,017,235	+		IAI47_09540	0.80	-0.5
2,017,235	+		IAI47_09540	0.80	+0.6
2,017,235	+		IAI47_09540	0.80	-0.4
2,017,236	-		IAI47_09540	0.81	-0.3
2,017,236	-		IAI47_09540	0.81	+0.8
2,017,299	+		IAI47_09540	0.85	-0.2
2,017,299	+		IAI47_09540	0.85	+1.1
2,017,299	+		IAI47_09540	0.85	-0.4
2,017,299	+		IAI47_09540	0.85	-0.0
2,017,299	+		IAI47_09540	0.85	+0.7
2,017,299	+		IAI47_09540	0.85	+0.2
2,017,300	-		IAI47_09540	0.85	-0.4
2,017,300	-		IAI47_09540	0.85	-0.4
2,017,347	-		IAI47_09540	0.89	+0.8
2,017,407	+				-0.4
2,017,407	+				-0.6
2,017,408	-				-0.7
2,017,408	-				-0.7
2,017,408	-				-0.4
2,017,409	+				-0.3
2,017,409	+				-1.0
2,017,410	-				+0.8
2,017,410	-				+0.3
2,017,410	-				+1.4
2,017,427	-				+0.4
2,017,427	-				+0.6
2,017,463	+				+0.2
2,017,463	+				-0.2
2,017,463	+				+1.4
2,017,464	-				+1.2
2,017,488	+				+0.2
2,017,488	+				+0.1
2,017,489	-				+0.3
2,017,525	+				-0.2
2,017,526	-				+1.3
2,017,526	-				+1.0
2,017,586	+		IAI47_09545	0.14	+0.8
2,017,623	+		IAI47_09545	0.19	-0.4
2,017,633	+		IAI47_09545	0.20	-0.1
2,017,633	+		IAI47_09545	0.20	-0.3
2,017,633	+		IAI47_09545	0.20	+0.8
2,017,633	+		IAI47_09545	0.20	+0.8
2,017,633	+		IAI47_09545	0.20	+1.2
2,017,633	+		IAI47_09545	0.20	-1.6
2,017,633	+		IAI47_09545	0.20	-0.0
2,017,633	+		IAI47_09545	0.20	+0.4
2,017,633	+		IAI47_09545	0.20	-1.2
2,017,634	-		IAI47_09545	0.21	-0.1
2,017,634	-		IAI47_09545	0.21	-1.1
2,017,634	-		IAI47_09545	0.21	-0.0
2,017,728	-		IAI47_09545	0.33	-0.2
2,017,805	+		IAI47_09545	0.44	-1.7
2,017,805	+		IAI47_09545	0.44	+0.6
2,017,805	+		IAI47_09545	0.44	-0.6
2,017,806	-		IAI47_09545	0.44	-0.3
2,017,806	-		IAI47_09545	0.44	+0.8
2,017,806	-		IAI47_09545	0.44	+0.1
2,017,806	-		IAI47_09545	0.44	-0.5
2,017,806	-		IAI47_09545	0.44	-1.4
2,017,832	+		IAI47_09545	0.48	+1.6
2,017,832	+		IAI47_09545	0.48	-1.3
2,017,832	+		IAI47_09545	0.48	+1.6
2,017,833	-		IAI47_09545	0.48	+0.1
2,017,919	-		IAI47_09545	0.60	-0.2
2,017,919	-		IAI47_09545	0.60	+0.7
2,017,949	+		IAI47_09545	0.64	-0.3
2,017,949	+		IAI47_09545	0.64	-0.3
2,017,950	-		IAI47_09545	0.64	-1.2
2,018,054	+		IAI47_09545	0.78	+1.2
2,018,055	-		IAI47_09545	0.79	+1.3
2,018,088	+		IAI47_09545	0.83	-0.5
2,018,135	+		IAI47_09545	0.90	-0.8
2,018,136	-		IAI47_09545	0.90	-0.3
2,018,152	+				-1.8
2,018,152	+				+0.4
2,018,194	+				-0.0
2,018,194	+				-1.1
2,018,195	-				+0.7
2,018,195	-				+1.2
2,018,210	+				+0.4
2,018,210	+				+0.2
2,018,210	+				-2.2
2,018,210	+				+1.3
2,018,211	-				-0.2
2,018,211	-				+0.2
2,018,211	-				+1.0
2,018,211	-				+1.1
2,018,211	-				+0.9
2,018,246	+				+0.8
2,018,247	-				+1.0
2,018,247	-				-0.3
2,018,247	-				-0.4
2,018,247	-				+3.7
2,018,269	+				+1.2
2,018,270	-				-0.0
2,018,270	-				+2.2
2,018,270	-				+0.5
2,018,270	-				-0.8
2,018,270	-				+1.2
2,018,303	+				-1.0
2,018,303	+				+0.2
2,018,303	+				+0.2
2,018,303	+				-0.0
2,018,304	-				+0.2
2,018,304	-				+1.2
2,018,304	-				+1.2
2,018,305	+				+0.9
2,018,305	+				+0.6
2,018,305	+				+0.7
2,018,305	+				+1.7
2,018,305	+				-0.9
2,018,305	+				+1.8
2,018,305	+				-0.2
2,018,305	+				+0.5
2,018,305	+				+0.5
2,018,306	-				+1.0
2,018,306	-				-0.1
2,018,306	-				-0.2
2,018,306	-				-0.5
2,018,307	+				+0.4
2,018,307	+				-0.8
2,018,307	+				-0.7
2,018,307	+				+0.2
2,018,307	+				+0.2
2,018,307	+				-1.0
2,018,308	-				+0.8
2,018,308	-				-0.9
2,018,308	-				+4.2
2,018,308	-				+1.9
2,018,308	-				+2.5
2,018,308	-				+1.0
2,018,317	+				+1.9
2,018,317	+				-1.5
2,018,317	+				-0.8
2,018,317	+				+0.4
2,018,317	+				+0.3
2,018,317	+				-0.0
2,018,317	+				-0.4
2,018,317	+				+0.6
2,018,318	-				+0.8
2,018,362	+				+1.7
2,018,371	-				+0.7
2,018,386	-				-0.2
2,018,386	-				+2.4
2,018,397	+				+0.7
2,018,417	+				+1.6
2,018,417	+				+1.7
2,018,417	+				+0.4
2,018,418	-				+0.4
2,018,418	-				+1.2
2,018,496	+		IAI47_09550	0.26	+0.8
2,018,496	+		IAI47_09550	0.26	-1.5
2,018,496	+		IAI47_09550	0.26	+0.4
2,018,496	+		IAI47_09550	0.26	+0.8
2,018,496	+		IAI47_09550	0.26	+0.8
2,018,497	-		IAI47_09550	0.26	+0.8
2,018,497	-		IAI47_09550	0.26	-0.6
2,018,497	-		IAI47_09550	0.26	-1.0
2,018,497	-		IAI47_09550	0.26	-0.5
2,018,500	+		IAI47_09550	0.27	+0.8
2,018,500	+		IAI47_09550	0.27	+0.8
2,018,500	+		IAI47_09550	0.27	-0.2
2,018,500	+		IAI47_09550	0.27	-0.2
2,018,536	-		IAI47_09550	0.36	-0.5
2,018,536	-		IAI47_09550	0.36	+3.2
2,018,552	+		IAI47_09550	0.39	+2.4
2,018,553	-		IAI47_09550	0.40	+1.2
2,018,574	-		IAI47_09550	0.45	+1.6
2,018,588	+		IAI47_09550	0.48	+3.4
2,018,588	+		IAI47_09550	0.48	-0.6
2,018,640	+		IAI47_09550	0.61	+0.4
2,018,663	+		IAI47_09550	0.66	+2.6
2,018,664	-		IAI47_09550	0.66	+1.2
2,018,800	+				-0.0
2,018,800	+				+0.4
2,018,800	+				+0.6
2,018,800	+				-0.4
2,018,800	+				-0.7
2,018,800	+				+2.4
2,018,800	+				+2.0
2,018,800	+				+0.6
2,018,801	-				-1.0
2,018,821	+				+1.0
2,018,822	-				+2.2
2,018,822	-				-2.0
2,018,824	+				+1.8
2,018,824	+				-0.2
2,018,825	-				-0.8
2,018,825	-				-1.0
2,018,825	-				+0.2
2,018,858	+				-0.9
2,018,858	+				+3.7
2,018,859	-				+1.0
2,018,868	+				-0.3
2,018,868	+				-0.1
2,018,868	+				-0.5
2,018,869	-				+0.2
2,018,869	-				-0.7
2,018,869	-				-0.4
2,018,869	-				+0.7
2,018,869	-				+0.6
2,018,937	+				+1.2
2,018,937	+				-0.0
2,018,937	+				+1.3
2,018,937	+				+1.3
2,018,937	+				+0.5
2,018,938	-				+1.2
2,018,938	-				+0.2
2,018,938	-				+1.0
2,018,938	-				+0.2
2,018,938	-				+1.1
2,018,938	-				+0.4
2,018,982	-				+0.1
2,018,982	-				+0.3
2,019,072	+				-0.0
2,019,072	+				-0.1
2,019,073	-				+0.1
2,019,115	-		IAI47_09555	0.13	-0.5
2,019,115	-		IAI47_09555	0.13	-2.6
2,019,132	+		IAI47_09555	0.14	+0.4
2,019,132	+		IAI47_09555	0.14	-0.9
2,019,132	+		IAI47_09555	0.14	-1.2
2,019,132	+		IAI47_09555	0.14	+0.4
2,019,132	+		IAI47_09555	0.14	+0.3
2,019,172	+		IAI47_09555	0.17	-1.9
2,019,172	+		IAI47_09555	0.17	-0.5
2,019,172	+		IAI47_09555	0.17	+0.8
2,019,201	+		IAI47_09555	0.19	-0.3
2,019,201	+		IAI47_09555	0.19	-1.2
2,019,202	-		IAI47_09555	0.19	+0.2
2,019,202	-		IAI47_09555	0.19	+0.9
2,019,202	-		IAI47_09555	0.19	+0.1
2,019,203	+		IAI47_09555	0.19	-0.6
2,019,204	-		IAI47_09555	0.19	-2.0