Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04275 and IAI47_04280 are separated by 80 nucleotides IAI47_04280 and IAI47_04285 are separated by 33 nucleotides IAI47_04285 and IAI47_04290 are separated by 166 nucleotides
IAI47_04275: IAI47_04275 - lytic murein transglycosylase B, at 901,584 to 902,666
_04275
IAI47_04280: IAI47_04280 - alkylphosphonate utilization protein, at 902,747 to 903,082
_04280
IAI47_04285: IAI47_04285 - dihydrodipicolinate synthase family protein, at 903,116 to 904,003
_04285
IAI47_04290: IAI47_04290 - trans-aconitate 2-methyltransferase, at 904,170 to 904,946
_04290
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 902.120 kb on + strand, within IAI47_04275 at 902.120 kb on + strand, within IAI47_04275 at 902.120 kb on + strand, within IAI47_04275 at 902.121 kb on - strand, within IAI47_04275 at 902.121 kb on - strand, within IAI47_04275 at 902.121 kb on - strand, within IAI47_04275 at 902.124 kb on + strand, within IAI47_04275 at 902.142 kb on + strand, within IAI47_04275 at 902.143 kb on - strand, within IAI47_04275 at 902.143 kb on - strand, within IAI47_04275 at 902.183 kb on + strand, within IAI47_04275 at 902.184 kb on - strand, within IAI47_04275 at 902.184 kb on - strand, within IAI47_04275 at 902.184 kb on - strand, within IAI47_04275 at 902.184 kb on - strand, within IAI47_04275 at 902.239 kb on - strand, within IAI47_04275 at 902.239 kb on - strand, within IAI47_04275 at 902.239 kb on - strand, within IAI47_04275 at 902.249 kb on + strand, within IAI47_04275 at 902.249 kb on + strand, within IAI47_04275 at 902.250 kb on - strand, within IAI47_04275 at 902.250 kb on - strand, within IAI47_04275 at 902.262 kb on + strand, within IAI47_04275 at 902.262 kb on + strand, within IAI47_04275 at 902.262 kb on + strand, within IAI47_04275 at 902.263 kb on - strand, within IAI47_04275 at 902.263 kb on - strand, within IAI47_04275 at 902.263 kb on - strand, within IAI47_04275 at 902.271 kb on + strand, within IAI47_04275 at 902.328 kb on - strand, within IAI47_04275 at 902.328 kb on - strand, within IAI47_04275 at 902.328 kb on - strand, within IAI47_04275 at 902.346 kb on + strand, within IAI47_04275 at 902.346 kb on + strand, within IAI47_04275 at 902.346 kb on + strand, within IAI47_04275 at 902.347 kb on - strand, within IAI47_04275 at 902.439 kb on + strand, within IAI47_04275 at 902.527 kb on + strand, within IAI47_04275 at 902.527 kb on + strand, within IAI47_04275 at 902.528 kb on - strand, within IAI47_04275 at 902.528 kb on - strand, within IAI47_04275 at 902.528 kb on - strand, within IAI47_04275 at 902.528 kb on - strand, within IAI47_04275 at 902.538 kb on + strand, within IAI47_04275 at 902.539 kb on - strand, within IAI47_04275 at 902.539 kb on - strand, within IAI47_04275 at 902.539 kb on - strand, within IAI47_04275 at 902.539 kb on - strand, within IAI47_04275 at 902.568 kb on + strand at 902.568 kb on + strand at 902.568 kb on + strand at 902.569 kb on - strand at 902.569 kb on - strand at 902.569 kb on - strand at 902.569 kb on - strand at 902.569 kb on - strand at 902.583 kb on + strand at 902.584 kb on - strand at 902.601 kb on + strand at 902.662 kb on + strand at 902.662 kb on + strand at 902.662 kb on + strand at 902.662 kb on + strand at 902.664 kb on + strand at 902.664 kb on + strand at 902.664 kb on + strand at 902.664 kb on + strand at 902.664 kb on + strand at 902.665 kb on - strand at 902.665 kb on - strand at 902.665 kb on - strand at 902.665 kb on - strand at 902.680 kb on + strand at 902.681 kb on - strand at 902.681 kb on - strand at 902.687 kb on - strand at 902.687 kb on - strand at 902.687 kb on - strand at 902.687 kb on - strand at 902.692 kb on + strand at 902.692 kb on + strand at 902.692 kb on + strand at 902.694 kb on + strand at 902.694 kb on + strand at 902.694 kb on + strand at 902.694 kb on + strand at 902.694 kb on + strand at 902.695 kb on - strand at 902.695 kb on - strand at 902.695 kb on - strand at 902.731 kb on + strand at 902.731 kb on + strand at 902.731 kb on + strand at 902.731 kb on + strand at 902.731 kb on + strand at 902.732 kb on - strand at 902.732 kb on - strand at 902.732 kb on - strand at 902.746 kb on + strand at 902.746 kb on + strand at 902.747 kb on - strand at 902.747 kb on - strand at 902.754 kb on + strand at 902.754 kb on + strand at 902.755 kb on - strand at 902.755 kb on - strand at 902.755 kb on - strand at 902.783 kb on + strand, within IAI47_04280 at 902.783 kb on + strand, within IAI47_04280 at 902.830 kb on + strand, within IAI47_04280 at 902.830 kb on + strand, within IAI47_04280 at 902.830 kb on + strand, within IAI47_04280 at 902.830 kb on + strand, within IAI47_04280 at 902.831 kb on - strand, within IAI47_04280 at 902.831 kb on - strand, within IAI47_04280 at 902.929 kb on + strand, within IAI47_04280 at 902.929 kb on + strand, within IAI47_04280 at 902.930 kb on - strand, within IAI47_04280 at 902.930 kb on - strand, within IAI47_04280 at 902.975 kb on - strand, within IAI47_04280 at 902.975 kb on - strand, within IAI47_04280 at 903.021 kb on - strand, within IAI47_04280 at 903.026 kb on - strand, within IAI47_04280 at 903.117 kb on + strand at 903.118 kb on - strand at 903.118 kb on - strand at 903.118 kb on - strand at 903.170 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.171 kb on + strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.172 kb on - strand at 903.175 kb on + strand at 903.175 kb on + strand at 903.175 kb on + strand at 903.175 kb on + strand at 903.175 kb on + strand at 903.175 kb on + strand at 903.176 kb on - strand at 903.176 kb on - strand at 903.176 kb on - strand at 903.176 kb on - strand at 903.201 kb on + strand at 903.202 kb on - strand at 903.202 kb on - strand at 903.202 kb on - strand at 903.223 kb on + strand, within IAI47_04285 at 903.224 kb on - strand, within IAI47_04285 at 903.224 kb on - strand, within IAI47_04285 at 903.224 kb on - strand, within IAI47_04285 at 903.250 kb on + strand, within IAI47_04285 at 903.250 kb on + strand, within IAI47_04285 at 903.250 kb on + strand, within IAI47_04285 at 903.255 kb on + strand, within IAI47_04285 at 903.255 kb on + strand, within IAI47_04285 at 903.256 kb on - strand, within IAI47_04285 at 903.256 kb on - strand, within IAI47_04285 at 903.256 kb on - strand, within IAI47_04285 at 903.256 kb on - strand, within IAI47_04285 at 903.256 kb on - strand, within IAI47_04285 at 903.345 kb on + strand, within IAI47_04285 at 903.346 kb on - strand, within IAI47_04285 at 903.354 kb on - strand, within IAI47_04285 at 903.354 kb on - strand, within IAI47_04285 at 903.361 kb on + strand, within IAI47_04285 at 903.361 kb on + strand, within IAI47_04285 at 903.361 kb on + strand, within IAI47_04285 at 903.361 kb on + strand, within IAI47_04285 at 903.414 kb on + strand, within IAI47_04285 at 903.415 kb on - strand, within IAI47_04285 at 903.505 kb on + strand, within IAI47_04285 at 903.506 kb on - strand, within IAI47_04285 at 903.514 kb on + strand, within IAI47_04285 at 903.526 kb on + strand, within IAI47_04285 at 903.526 kb on + strand, within IAI47_04285 at 903.526 kb on + strand, within IAI47_04285 at 903.527 kb on - strand, within IAI47_04285 at 903.527 kb on - strand, within IAI47_04285 at 903.530 kb on + strand, within IAI47_04285 at 903.531 kb on - strand, within IAI47_04285 at 903.531 kb on - strand, within IAI47_04285 at 903.596 kb on - strand, within IAI47_04285 at 903.597 kb on + strand, within IAI47_04285 at 903.597 kb on + strand, within IAI47_04285 at 903.597 kb on + strand, within IAI47_04285 at 903.642 kb on + strand, within IAI47_04285 at 903.642 kb on + strand, within IAI47_04285 at 903.642 kb on + strand, within IAI47_04285 at 903.642 kb on + strand, within IAI47_04285 at 903.642 kb on + strand, within IAI47_04285 at 903.672 kb on + strand, within IAI47_04285 at 903.673 kb on - strand, within IAI47_04285 at 903.673 kb on - strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.675 kb on + strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.676 kb on - strand, within IAI47_04285 at 903.678 kb on + strand, within IAI47_04285 at 903.678 kb on + strand, within IAI47_04285 at 903.679 kb on - strand, within IAI47_04285 at 903.679 kb on - strand, within IAI47_04285 at 903.752 kb on - strand, within IAI47_04285 at 903.818 kb on + strand, within IAI47_04285 at 903.819 kb on - strand, within IAI47_04285 at 903.819 kb on - strand, within IAI47_04285 at 903.877 kb on + strand, within IAI47_04285 at 903.877 kb on + strand, within IAI47_04285 at 903.878 kb on - strand, within IAI47_04285 at 903.878 kb on - strand, within IAI47_04285 at 903.878 kb on - strand, within IAI47_04285 at 903.965 kb on - strand at 903.965 kb on - strand at 904.003 kb on + strand at 904.003 kb on + strand at 904.004 kb on - strand at 904.004 kb on - strand at 904.004 kb on - strand at 904.004 kb on - strand at 904.133 kb on + strand at 904.134 kb on - strand at 904.134 kb on - strand at 904.134 kb on - strand at 904.150 kb on + strand at 904.150 kb on + strand at 904.150 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.199 kb on + strand at 904.199 kb on + strand at 904.199 kb on + strand at 904.200 kb on - strand at 904.247 kb on + strand at 904.247 kb on + strand at 904.247 kb on + strand at 904.248 kb on - strand, within IAI47_04290 at 904.248 kb on - strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.273 kb on + strand, within IAI47_04290 at 904.274 kb on - strand, within IAI47_04290 at 904.304 kb on + strand, within IAI47_04290 at 904.322 kb on + strand, within IAI47_04290 at 904.372 kb on + strand, within IAI47_04290 at 904.372 kb on + strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.461 kb on + strand, within IAI47_04290 at 904.461 kb on + strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.566 kb on - strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.680 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.719 kb on - strand, within IAI47_04290 at 904.728 kb on - strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.767 kb on - strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.848 kb on + strand, within IAI47_04290 at 904.849 kb on - strand, within IAI47_04290 at 904.866 kb on - strand, within IAI47_04290 at 904.944 kb on + strand at 904.944 kb on + strand at 904.944 kb on + strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 902,120 + IAI47_04275 0.49 -0.2 902,120 + IAI47_04275 0.49 -0.2 902,120 + IAI47_04275 0.49 -1.9 902,121 - IAI47_04275 0.50 +0.4 902,121 - IAI47_04275 0.50 -1.2 902,121 - IAI47_04275 0.50 -0.2 902,124 + IAI47_04275 0.50 +0.1 902,142 + IAI47_04275 0.52 +2.6 902,143 - IAI47_04275 0.52 -2.6 902,143 - IAI47_04275 0.52 -2.1 902,183 + IAI47_04275 0.55 -2.2 902,184 - IAI47_04275 0.55 -0.7 902,184 - IAI47_04275 0.55 -0.2 902,184 - IAI47_04275 0.55 +1.0 902,184 - IAI47_04275 0.55 -0.7 902,239 - IAI47_04275 0.60 -0.3 902,239 - IAI47_04275 0.60 -0.3 902,239 - IAI47_04275 0.60 +1.7 902,249 + IAI47_04275 0.61 +1.8 902,249 + IAI47_04275 0.61 +0.2 902,250 - IAI47_04275 0.61 -0.3 902,250 - IAI47_04275 0.61 +0.6 902,262 + IAI47_04275 0.63 -1.5 902,262 + IAI47_04275 0.63 +0.6 902,262 + IAI47_04275 0.63 -0.2 902,263 - IAI47_04275 0.63 +0.8 902,263 - IAI47_04275 0.63 -0.2 902,263 - IAI47_04275 0.63 -1.9 902,271 + IAI47_04275 0.63 -0.2 902,328 - IAI47_04275 0.69 -0.2 902,328 - IAI47_04275 0.69 +0.1 902,328 - IAI47_04275 0.69 +0.8 902,346 + IAI47_04275 0.70 +0.4 902,346 + IAI47_04275 0.70 -0.1 902,346 + IAI47_04275 0.70 +0.0 902,347 - IAI47_04275 0.70 -2.6 902,439 + IAI47_04275 0.79 -1.6 902,527 + IAI47_04275 0.87 +1.5 902,527 + IAI47_04275 0.87 +0.1 902,528 - IAI47_04275 0.87 -0.8 902,528 - IAI47_04275 0.87 +0.2 902,528 - IAI47_04275 0.87 +0.1 902,528 - IAI47_04275 0.87 -1.1 902,538 + IAI47_04275 0.88 +1.2 902,539 - IAI47_04275 0.88 -0.8 902,539 - IAI47_04275 0.88 +3.6 902,539 - IAI47_04275 0.88 -1.8 902,539 - IAI47_04275 0.88 -0.8 902,568 + -0.7 902,568 + +1.3 902,568 + +0.3 902,569 - -1.1 902,569 - -0.9 902,569 - +0.0 902,569 - -1.4 902,569 - -0.2 902,583 + +0.1 902,584 - +0.7 902,601 + -0.7 902,662 + +0.4 902,662 + -1.5 902,662 + -0.9 902,662 + +2.4 902,664 + +0.4 902,664 + +0.8 902,664 + +0.0 902,664 + +0.3 902,664 + +0.3 902,665 - -1.0 902,665 - -1.9 902,665 - -2.8 902,665 - +0.6 902,680 + +1.2 902,681 - -0.7 902,681 - -1.6 902,687 - -0.4 902,687 - +0.3 902,687 - +0.0 902,687 - -0.9 902,692 + -0.8 902,692 + +2.0 902,692 + -0.1 902,694 + -1.5 902,694 + +0.7 902,694 + -0.7 902,694 + -0.7 902,694 + +0.9 902,695 - -1.8 902,695 - -0.3 902,695 - -1.2 902,731 + +0.2 902,731 + -0.8 902,731 + -0.8 902,731 + +0.2 902,731 + +0.5 902,732 - +0.5 902,732 - +1.6 902,732 - -2.6 902,746 + -0.4 902,746 + +0.0 902,747 - -1.8 902,747 - +0.2 902,754 + +0.6 902,754 + +0.4 902,755 - -1.3 902,755 - +1.1 902,755 - -1.1 902,783 + IAI47_04280 0.11 +1.8 902,783 + IAI47_04280 0.11 +1.0 902,830 + IAI47_04280 0.25 +0.2 902,830 + IAI47_04280 0.25 -0.7 902,830 + IAI47_04280 0.25 +0.1 902,830 + IAI47_04280 0.25 +2.8 902,831 - IAI47_04280 0.25 -0.6 902,831 - IAI47_04280 0.25 -1.0 902,929 + IAI47_04280 0.54 +0.7 902,929 + IAI47_04280 0.54 +0.9 902,930 - IAI47_04280 0.54 -0.5 902,930 - IAI47_04280 0.54 -0.3 902,975 - IAI47_04280 0.68 +0.0 902,975 - IAI47_04280 0.68 +4.6 903,021 - IAI47_04280 0.82 -0.1 903,026 - IAI47_04280 0.83 +0.0 903,117 + -0.2 903,118 - 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Or see this region's nucleotide sequence