Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04130 and IAI47_04135 are separated by 76 nucleotides IAI47_04135 and IAI47_04140 are separated by 149 nucleotides IAI47_04140 and IAI47_04145 are separated by 94 nucleotides
IAI47_04130: IAI47_04130 - CTP synthase (glutamine hydrolyzing), at 867,343 to 868,980
_04130
IAI47_04135: IAI47_04135 - phosphopyruvate hydratase, at 869,057 to 870,352
_04135
IAI47_04140: IAI47_04140 - 7-carboxy-7-deazaguanine synthase QueE, at 870,502 to 871,173
_04140
IAI47_04145: IAI47_04145 - 6-carboxytetrahydropterin synthase QueD, at 871,268 to 871,627
_04145
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 868.970 kb on + strand at 868.978 kb on + strand at 868.978 kb on + strand at 868.978 kb on + strand at 869.023 kb on + strand at 869.023 kb on + strand at 869.023 kb on + strand at 870.310 kb on + strand at 870.339 kb on + strand at 870.340 kb on + strand at 870.340 kb on + strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.351 kb on - strand at 870.389 kb on + strand at 870.390 kb on - strand at 870.390 kb on - strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.467 kb on + strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.468 kb on - strand at 870.550 kb on + strand at 870.550 kb on + strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.551 kb on - strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.553 kb on + strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.554 kb on - strand at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.584 kb on + strand, within IAI47_04140 at 870.585 kb on - strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.606 kb on + strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.607 kb on - strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.669 kb on + strand, within IAI47_04140 at 870.774 kb on + strand, within IAI47_04140 at 870.797 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 870.935 kb on - strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.034 kb on + strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.035 kb on - strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.044 kb on + strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.045 kb on - strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.064 kb on + strand, within IAI47_04140 at 871.126 kb on - strand at 871.126 kb on - strand at 871.152 kb on + strand at 871.153 kb on - strand at 871.153 kb on - strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.156 kb on + strand at 871.157 kb on - strand at 871.164 kb on + strand at 871.176 kb on - strand at 871.181 kb on + strand at 871.181 kb on + strand at 871.182 kb on - strand at 871.182 kb on - strand at 871.193 kb on - strand at 871.236 kb on - strand at 871.236 kb on - strand at 871.269 kb on + strand at 871.322 kb on + strand, within IAI47_04145 at 871.322 kb on + strand, within IAI47_04145 at 871.323 kb on - strand, within IAI47_04145
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 868,970 + +0.9 868,978 + -0.5 868,978 + +0.0 868,978 + +0.3 869,023 + -3.1 869,023 + -0.3 869,023 + -1.7 870,310 + -1.6 870,339 + -0.3 870,340 + +0.3 870,340 + -0.9 870,351 - -2.2 870,351 - +0.0 870,351 - +0.3 870,389 + -0.2 870,390 - -0.4 870,390 - -0.2 870,467 + -1.9 870,467 + -0.6 870,467 + +0.7 870,467 + -1.1 870,467 + -2.4 870,467 + -0.4 870,468 - +0.9 870,468 - -0.4 870,468 - -0.4 870,468 - +1.3 870,468 - -1.3 870,550 + -0.1 870,550 + -1.3 870,551 - +1.0 870,551 - -0.8 870,551 - +1.4 870,553 + -1.0 870,553 + -3.5 870,553 + +1.3 870,553 + -0.3 870,553 + -2.3 870,554 - -1.6 870,554 - +0.1 870,554 - +0.2 870,554 - +0.1 870,554 - -0.6 870,554 - -1.0 870,554 - +1.5 870,554 - +0.4 870,554 - +0.4 870,554 - +1.1 870,584 + IAI47_04140 0.12 -1.9 870,584 + IAI47_04140 0.12 +0.8 870,584 + IAI47_04140 0.12 -0.1 870,585 - IAI47_04140 0.12 -1.6 870,606 + IAI47_04140 0.15 +0.9 870,606 + IAI47_04140 0.15 -2.1 870,606 + IAI47_04140 0.15 -0.7 870,606 + IAI47_04140 0.15 -0.4 870,606 + IAI47_04140 0.15 -0.7 870,606 + IAI47_04140 0.15 +0.0 870,606 + IAI47_04140 0.15 -0.6 870,607 - IAI47_04140 0.16 -0.6 870,607 - IAI47_04140 0.16 -0.0 870,607 - IAI47_04140 0.16 -2.3 870,607 - IAI47_04140 0.16 +0.7 870,669 + IAI47_04140 0.25 -1.2 870,669 + IAI47_04140 0.25 -0.5 870,774 + IAI47_04140 0.40 -1.1 870,797 - IAI47_04140 0.44 +0.2 870,935 - IAI47_04140 0.64 -0.1 870,935 - IAI47_04140 0.64 +0.8 870,935 - IAI47_04140 0.64 -1.2 871,034 + IAI47_04140 0.79 -0.6 871,034 + IAI47_04140 0.79 -2.0 871,034 + IAI47_04140 0.79 +1.4 871,034 + IAI47_04140 0.79 +0.1 871,034 + IAI47_04140 0.79 -0.2 871,035 - IAI47_04140 0.79 -0.3 871,035 - IAI47_04140 0.79 -0.6 871,044 + IAI47_04140 0.81 -1.9 871,044 + IAI47_04140 0.81 -0.5 871,044 + IAI47_04140 0.81 +0.0 871,044 + IAI47_04140 0.81 +1.3 871,045 - IAI47_04140 0.81 -0.2 871,045 - IAI47_04140 0.81 +0.3 871,064 + IAI47_04140 0.84 -1.9 871,064 + IAI47_04140 0.84 -2.1 871,064 + IAI47_04140 0.84 -3.0 871,064 + IAI47_04140 0.84 -2.6 871,126 - -1.3 871,126 - -1.7 871,152 + -0.7 871,153 - -1.1 871,153 - -2.9 871,156 + +0.2 871,156 + -0.7 871,156 + -0.6 871,156 + -0.6 871,157 - -1.5 871,164 + -0.2 871,176 - +0.1 871,181 + -1.1 871,181 + -1.4 871,182 - -0.2 871,182 - +0.4 871,193 - +0.0 871,236 - +1.2 871,236 - +0.2 871,269 + -0.5 871,322 + IAI47_04145 0.15 -1.1 871,322 + IAI47_04145 0.15 -1.0 871,323 - IAI47_04145 0.15 -1.1
Or see this region's nucleotide sequence