Strain Fitness in Pantoea sp. MT58 around IAI47_03120

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
645,658	+				+0.4
645,658	+				-0.7
645,658	+				-2.3
645,658	+				+0.1
646,362	+				-2.0
646,362	+				+0.2
646,362	+				-1.2
646,380	+				-1.5
646,381	-				-1.6
646,435	+				-0.1
646,435	+				+0.5
646,436	-				-1.4
646,436	-				-2.8
646,466	+				-1.0
646,466	+				-0.1
646,467	-				-1.5
646,467	-				-2.2
646,467	-				-1.0
646,467	-				+1.3
646,470	+				-0.6
646,470	+				+0.8
646,470	+				-1.1
646,470	+				+0.7
646,486	+				-0.2
646,486	+				-0.5
646,487	-				+0.1
646,530	+				-2.2
646,530	+				-1.5
646,531	-				-0.5
646,531	-				-1.5
646,531	-				-0.3
646,541	+				-0.8
646,560	-				-0.5
646,564	+				+0.8
646,564	+				-0.1
646,610	+				-1.4
646,610	+				+0.2
646,610	+				-0.3
646,610	+				-0.9
646,611	-				-2.0
646,611	-				-1.0
646,611	-				+1.3
646,614	+				+0.3
646,614	+				-1.5
646,614	+				+1.1
646,614	+				-0.1
646,614	+				-1.1
646,614	+				-0.3
646,615	-				+1.0
646,615	-				-0.9
646,615	-				+0.1
646,615	-				+0.2
646,615	-				+0.1
646,615	-				-1.1
646,672	+				-1.1
646,672	+				+0.9
646,672	+				-1.0
646,672	+				+0.7
646,672	+				-0.1
646,673	-				-3.2
646,675	-				-0.0
646,725	+		IAI47_03120	0.16	+0.5
646,747	+		IAI47_03120	0.19	+1.9
646,747	+		IAI47_03120	0.19	+4.3
646,747	+		IAI47_03120	0.19	-0.2
646,747	+		IAI47_03120	0.19	+0.8
646,748	-		IAI47_03120	0.19	+0.9
646,748	-		IAI47_03120	0.19	+2.3
646,748	-		IAI47_03120	0.19	+1.3
646,748	-		IAI47_03120	0.19	+0.9
646,748	-		IAI47_03120	0.19	-0.2
646,749	+		IAI47_03120	0.19	-2.5
646,749	+		IAI47_03120	0.19	-0.4
646,749	+		IAI47_03120	0.19	-0.5
646,749	+		IAI47_03120	0.19	+0.8
646,749	+		IAI47_03120	0.19	+0.1
646,750	-		IAI47_03120	0.19	-1.6
646,750	-		IAI47_03120	0.19	-0.2
646,785	+		IAI47_03120	0.24	+0.3
646,786	-		IAI47_03120	0.24	-1.3
646,786	-		IAI47_03120	0.24	+0.8
646,838	-		IAI47_03120	0.30	+0.1
646,886	+		IAI47_03120	0.36	+0.4
646,886	+		IAI47_03120	0.36	-0.9
646,886	+		IAI47_03120	0.36	+0.6
646,887	-		IAI47_03120	0.37	-2.0
646,887	-		IAI47_03120	0.37	-1.6
646,901	+		IAI47_03120	0.38	+1.7
646,901	+		IAI47_03120	0.38	+1.5
646,901	+		IAI47_03120	0.38	-0.6
646,901	+		IAI47_03120	0.38	+0.6
646,902	-		IAI47_03120	0.38	+0.9
646,902	-		IAI47_03120	0.38	+1.6
646,902	-		IAI47_03120	0.38	-2.2
646,960	+		IAI47_03120	0.46	+0.6
646,960	+		IAI47_03120	0.46	+1.0
646,960	+		IAI47_03120	0.46	-1.9
646,961	-		IAI47_03120	0.46	-0.1
646,961	-		IAI47_03120	0.46	-0.8
646,961	-		IAI47_03120	0.46	-0.7
646,991	+		IAI47_03120	0.50	+0.2
646,991	+		IAI47_03120	0.50	-0.2
646,991	+		IAI47_03120	0.50	+1.3
646,991	+		IAI47_03120	0.50	-0.5
646,992	-		IAI47_03120	0.50	+0.1
646,992	-		IAI47_03120	0.50	-0.8
646,992	-		IAI47_03120	0.50	-1.5
646,992	-		IAI47_03120	0.50	-1.1
646,992	-		IAI47_03120	0.50	-0.8
647,007	+		IAI47_03120	0.52	-1.1
647,100	+		IAI47_03120	0.64	+0.2
647,100	+		IAI47_03120	0.64	+1.1
647,101	-		IAI47_03120	0.64	-1.3
647,101	-		IAI47_03120	0.64	-0.6
647,101	-		IAI47_03120	0.64	+1.4
647,101	-		IAI47_03120	0.64	-0.2
647,101	-		IAI47_03120	0.64	-0.4
647,109	+		IAI47_03120	0.65	-0.6
647,140	+		IAI47_03120	0.69	+0.3
647,140	+		IAI47_03120	0.69	-1.1
647,141	-		IAI47_03120	0.69	-1.1
647,226	+		IAI47_03120	0.80	+0.8
647,226	+		IAI47_03120	0.80	-0.2
647,226	+		IAI47_03120	0.80	-0.8
647,227	-		IAI47_03120	0.80	+0.9
647,253	+		IAI47_03120	0.83	-0.3
647,253	+		IAI47_03120	0.83	+0.7
647,272	+		IAI47_03120	0.85	-0.1
647,273	-		IAI47_03120	0.86	-0.8
647,273	-		IAI47_03120	0.86	+1.1
647,273	-		IAI47_03120	0.86	-0.9
647,273	-		IAI47_03120	0.86	+0.7
647,273	-		IAI47_03120	0.86	-0.2
647,287	+		IAI47_03120	0.87	-1.8
647,287	+		IAI47_03120	0.87	-0.5
647,287	+		IAI47_03120	0.87	+0.7
647,287	+		IAI47_03120	0.87	+0.2
647,288	-		IAI47_03120	0.88	-0.3
647,288	-		IAI47_03120	0.88	-0.4
647,288	-		IAI47_03120	0.88	-0.5
647,288	-		IAI47_03120	0.88	-1.8
647,288	-		IAI47_03120	0.88	+1.0
647,288	-		IAI47_03120	0.88	-1.2
647,288	-		IAI47_03120	0.88	+0.1
647,378	+				+0.9
647,378	+				-0.4
647,378	+				-0.7
647,378	+				+1.3
647,379	-				-0.5
647,379	-				+0.9
647,379	-				-2.1
647,379	-				-1.4
647,394	+				-0.9
647,394	+				+0.9
647,394	+				-0.0
647,394	+				+1.3
647,402	+				-0.7
647,402	+				+0.2
647,403	-				-1.8
647,403	-				+1.3
647,403	-				-0.7
647,423	+				+0.1
647,423	+				-1.3
647,423	+				-2.0
647,423	+				+1.6
647,423	+				+0.1
647,423	+				-0.6
647,424	-				+1.3
647,424	-				-0.2
647,446	+				-1.0
647,446	+				-0.4
647,554	+		IAI47_03125	0.10	-2.0
647,554	+		IAI47_03125	0.10	-1.4
647,554	+		IAI47_03125	0.10	-0.5
647,554	+		IAI47_03125	0.10	-2.6
647,554	+		IAI47_03125	0.10	-0.0
647,554	+		IAI47_03125	0.10	-1.9
647,555	-		IAI47_03125	0.10	+0.6
647,555	-		IAI47_03125	0.10	-1.6
647,555	-		IAI47_03125	0.10	+1.2
647,555	-		IAI47_03125	0.10	-1.5
647,555	-		IAI47_03125	0.10	+0.1
647,555	-		IAI47_03125	0.10	+0.0
647,555	-		IAI47_03125	0.10	-0.3
647,555	-		IAI47_03125	0.10	-1.3
647,555	-		IAI47_03125	0.10	-1.5
647,555	-		IAI47_03125	0.10	-1.1
647,555	-		IAI47_03125	0.10	-0.9
647,556	+		IAI47_03125	0.10	-1.1
647,556	+		IAI47_03125	0.10	-1.5
647,556	+		IAI47_03125	0.10	-1.8
647,556	+		IAI47_03125	0.10	-1.5
647,556	+		IAI47_03125	0.10	-2.7
647,556	+		IAI47_03125	0.10	-1.8
647,556	+		IAI47_03125	0.10	-1.3
647,556	+		IAI47_03125	0.10	+0.1
647,556	+		IAI47_03125	0.10	-1.6
647,556	+		IAI47_03125	0.10	+0.1
647,557	-		IAI47_03125	0.10	+0.3
647,557	-		IAI47_03125	0.10	+0.1
647,557	-		IAI47_03125	0.10	+0.6
647,557	-		IAI47_03125	0.10	-1.5
647,557	-		IAI47_03125	0.10	+3.9
647,557	-		IAI47_03125	0.10	-0.8
647,557	-				+0.8
647,557	-		IAI47_03125	0.10	-0.4
647,616	+		IAI47_03125	0.15	-1.2
647,617	-		IAI47_03125	0.15	+1.7
647,655	-		IAI47_03125	0.19	-2.1
647,655	-		IAI47_03125	0.19	-0.3
647,687	+		IAI47_03125	0.21	+0.5
647,703	+		IAI47_03125	0.23	-1.5
647,703	+		IAI47_03125	0.23	-1.5
647,703	+		IAI47_03125	0.23	-1.5
647,703	+		IAI47_03125	0.23	-1.3
647,703	+		IAI47_03125	0.23	-0.6
647,703	+		IAI47_03125	0.23	-1.2
647,703	+		IAI47_03125	0.23	-1.1
647,703	+		IAI47_03125	0.23	-3.0
647,703	+		IAI47_03125	0.23	-0.8
647,703	+		IAI47_03125	0.23	-1.5
647,703	+		IAI47_03125	0.23	-0.9
647,703	+		IAI47_03125	0.23	-1.1
647,703	+		IAI47_03125	0.23	-1.2
647,704	-		IAI47_03125	0.23	-1.6
647,704	-		IAI47_03125	0.23	-0.6
647,704	-		IAI47_03125	0.23	-2.4
647,704	-		IAI47_03125	0.23	+1.3
647,704	-		IAI47_03125	0.23	-1.4
647,704	-		IAI47_03125	0.23	-2.2
647,704	-		IAI47_03125	0.23	-1.8
647,704	-		IAI47_03125	0.23	+1.6
647,704	-		IAI47_03125	0.23	-0.7
647,840	+		IAI47_03125	0.35	-1.6
647,840	+		IAI47_03125	0.35	+2.4
647,840	+		IAI47_03125	0.35	-0.1
647,841	-		IAI47_03125	0.35	+0.6
647,841	-		IAI47_03125	0.35	+0.7
647,841	-		IAI47_03125	0.35	-0.8
647,841	-		IAI47_03125	0.35	+0.6
647,841	-		IAI47_03125	0.35	+0.1
647,884	+		IAI47_03125	0.38	+0.8
647,884	+		IAI47_03125	0.38	-1.6
647,884	+		IAI47_03125	0.38	-1.3
647,884	+		IAI47_03125	0.38	-0.7
647,885	-		IAI47_03125	0.39	-0.2
647,885	-		IAI47_03125	0.39	-0.6
647,885	-		IAI47_03125	0.39	-0.3
647,885	-		IAI47_03125	0.39	+0.8
647,898	+		IAI47_03125	0.40	-0.7
647,898	+		IAI47_03125	0.40	-1.2
647,899	-		IAI47_03125	0.40	-0.5
647,899	-		IAI47_03125	0.40	-0.9
647,914	+		IAI47_03125	0.41	-1.8
647,914	+		IAI47_03125	0.41	-0.9
647,915	-		IAI47_03125	0.41	-0.6
647,975	+		IAI47_03125	0.46	-1.5
647,975	+		IAI47_03125	0.46	-2.2
647,975	+		IAI47_03125	0.46	-1.4
647,975	+		IAI47_03125	0.46	-1.4
647,975	+		IAI47_03125	0.46	-2.6
647,975	+		IAI47_03125	0.46	-2.1
647,975	+		IAI47_03125	0.46	-3.1
647,975	+		IAI47_03125	0.46	-2.1
647,975	+		IAI47_03125	0.46	-0.5
647,975	+		IAI47_03125	0.46	-0.6
647,975	+		IAI47_03125	0.46	-1.7
647,975	+		IAI47_03125	0.46	-0.2
647,975	+		IAI47_03125	0.46	-0.0
647,975	+		IAI47_03125	0.46	-0.5
647,975	+		IAI47_03125	0.46	-2.6
647,976	-		IAI47_03125	0.46	-1.2
647,976	-		IAI47_03125	0.46	+0.7
647,976	-		IAI47_03125	0.46	+1.6
647,976	-		IAI47_03125	0.46	+0.6
647,976	-		IAI47_03125	0.46	+0.0
647,976	-		IAI47_03125	0.46	-2.2
647,976	-		IAI47_03125	0.46	-0.2
647,976	-		IAI47_03125	0.46	+0.1
647,976	-		IAI47_03125	0.46	+0.6
647,976	-		IAI47_03125	0.46	+0.4
647,976	-		IAI47_03125	0.46	-0.8
647,976	-		IAI47_03125	0.46	-0.4
647,976	-		IAI47_03125	0.46	-0.1
647,976	-		IAI47_03125	0.46	+1.2
647,976	-		IAI47_03125	0.46	-1.6
647,977	+		IAI47_03125	0.46	+0.4
647,977	+		IAI47_03125	0.46	-1.6
647,979	+		IAI47_03125	0.47	-0.8
648,011	-		IAI47_03125	0.49	+0.7
648,027	+		IAI47_03125	0.51	-1.0
648,027	+		IAI47_03125	0.51	-1.9
648,027	+		IAI47_03125	0.51	-0.4
648,027	+		IAI47_03125	0.51	-0.7
648,027	+		IAI47_03125	0.51	-2.5
648,028	-		IAI47_03125	0.51	-1.4
648,028	-		IAI47_03125	0.51	-1.8
648,028	-		IAI47_03125	0.51	-0.6
648,028	-		IAI47_03125	0.51	+1.1
648,028	-		IAI47_03125	0.51	-2.0
648,085	+		IAI47_03125	0.56	-1.3
648,104	+		IAI47_03125	0.57	+0.5
648,104	+		IAI47_03125	0.57	-0.2
648,104	+		IAI47_03125	0.57	+1.0
648,104	+		IAI47_03125	0.57	-1.5
648,105	-		IAI47_03125	0.57	-0.9
648,105	-		IAI47_03125	0.57	+2.4
648,105	-		IAI47_03125	0.57	-1.4
648,105	-		IAI47_03125	0.57	-1.0
648,142	+		IAI47_03125	0.61	+0.2
648,142	+		IAI47_03125	0.61	-0.4
648,143	-		IAI47_03125	0.61	-0.4
648,145	+		IAI47_03125	0.61	+0.6
648,146	-		IAI47_03125	0.61	+0.3
648,146	-		IAI47_03125	0.61	-0.4
648,225	+		IAI47_03125	0.68	-1.5
648,225	+		IAI47_03125	0.68	-0.3
648,226	-		IAI47_03125	0.68	-0.1
648,241	+		IAI47_03125	0.69	-2.4
648,306	+		IAI47_03125	0.75	-0.8
648,307	-		IAI47_03125	0.75	-0.5