Strain Fitness in Pantoea sp. MT58 around IAI47_00540

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
121,781	-				-3.3
121,826	+				-1.0
121,826	+				-0.1
121,853	+				+0.2
121,853	+				+1.0
121,853	+				+0.5
121,853	+				-1.3
121,853	+				+0.1
121,907	+				-0.7
121,908	-				-1.7
121,930	+				-0.8
121,931	-				+0.4
121,931	-				-1.4
121,948	+				-0.9
121,949	-				+0.7
121,950	+				-1.3
121,951	-				-3.3
121,963	-				+1.7
121,987	-				+1.4
122,031	-				+0.3
122,038	+				-0.8
122,038	+				-1.7
122,044	-				+0.4
122,047	-				-1.5
122,087	-				+0.5
122,095	-				+0.2
122,121	+		IAI47_00535	0.12	-0.6
122,121	+		IAI47_00535	0.12	+0.1
122,121	+		IAI47_00535	0.12	-1.4
122,122	-		IAI47_00535	0.12	+1.1
122,122	-		IAI47_00535	0.12	+0.2
122,122	-		IAI47_00535	0.12	-1.5
122,122	-		IAI47_00535	0.12	-1.8
122,122	-		IAI47_00535	0.12	+0.5
122,124	+		IAI47_00535	0.12	-2.6
122,125	-		IAI47_00535	0.12	-2.1
122,125	-		IAI47_00535	0.12	-0.7
122,130	+		IAI47_00535	0.13	+0.5
122,130	+		IAI47_00535	0.13	-0.1
122,130	+		IAI47_00535	0.13	-3.2
122,130	+		IAI47_00535	0.13	-0.9
122,180	+		IAI47_00535	0.21	-1.8
122,180	+		IAI47_00535	0.21	+0.9
122,181	-		IAI47_00535	0.21	+0.8
122,183	+		IAI47_00535	0.21	-1.5
122,184	-		IAI47_00535	0.22	-1.3
122,206	+		IAI47_00535	0.25	+1.4
122,207	-		IAI47_00535	0.25	-2.1
122,211	-		IAI47_00535	0.26	-0.9
122,234	+		IAI47_00535	0.29	-0.3
122,235	-		IAI47_00535	0.29	-0.0
122,266	+		IAI47_00535	0.34	-0.1
122,266	+		IAI47_00535	0.34	-0.7
122,266	+		IAI47_00535	0.34	-2.0
122,266	+		IAI47_00535	0.34	-1.5
122,267	-		IAI47_00535	0.34	-0.7
122,267	-		IAI47_00535	0.34	-0.7
122,267	-		IAI47_00535	0.34	-0.0
122,268	+		IAI47_00535	0.35	-1.5
122,269	-		IAI47_00535	0.35	+0.3
122,286	-		IAI47_00535	0.37	-0.1
122,288	+		IAI47_00535	0.38	+0.9
122,299	-		IAI47_00535	0.39	+2.3
122,299	-		IAI47_00535	0.39	-1.0
122,320	+		IAI47_00535	0.43	-0.4
122,321	-		IAI47_00535	0.43	-2.0
122,323	+		IAI47_00535	0.43	+0.1
122,323	+		IAI47_00535	0.43	-1.4
122,323	+		IAI47_00535	0.43	+0.6
122,324	-		IAI47_00535	0.43	+1.8
122,324	-		IAI47_00535	0.43	-1.4
122,437	+		IAI47_00535	0.61	-1.4
122,437	+		IAI47_00535	0.61	-0.6
122,437	+		IAI47_00535	0.61	+0.2
122,438	-		IAI47_00535	0.61	+2.5
122,438	-		IAI47_00535	0.61	-1.5
122,440	+		IAI47_00535	0.61	-0.9
122,448	+		IAI47_00535	0.62	+0.3
122,449	-		IAI47_00535	0.63	-0.8
122,467	+		IAI47_00535	0.65	-0.3
122,468	-		IAI47_00535	0.66	-0.6
122,479	+		IAI47_00535	0.67	+0.3
122,480	-		IAI47_00535	0.67	-0.1
122,480	-		IAI47_00535	0.67	+0.0
122,480	-		IAI47_00535	0.67	-1.6
122,480	-		IAI47_00535	0.67	-1.2
122,497	+		IAI47_00535	0.70	-0.7
122,497	+		IAI47_00535	0.70	-1.1
122,525	-		IAI47_00535	0.74	+0.5
122,525	-		IAI47_00535	0.74	-0.5
122,525	-		IAI47_00535	0.74	-1.3
122,525	-		IAI47_00535	0.74	+1.4
122,525	-		IAI47_00535	0.74	-0.8
122,537	+		IAI47_00535	0.76	-0.7
122,537	+		IAI47_00535	0.76	-1.7
122,537	+		IAI47_00535	0.76	-1.0
122,546	+		IAI47_00535	0.78	-0.7
122,547	-		IAI47_00535	0.78	+1.1
122,547	-		IAI47_00535	0.78	-0.9
122,548	+		IAI47_00535	0.78	-1.1
122,567	-		IAI47_00535	0.81	-0.7
122,662	+				+0.2
122,662	+				-1.3
122,665	+				+0.2
122,666	-				-1.3
122,666	-				-2.0
122,666	-				-1.9
122,681	+				+0.1
122,689	+				-1.2
122,692	+				-1.9
122,692	+				+0.1
122,693	-				-2.3
122,693	-				-0.3
122,693	-				-2.8
122,730	+				-1.8
122,770	-				-0.1
122,773	+				+0.7
122,805	-		IAI47_00540	0.12	-0.4
122,805	-		IAI47_00540	0.12	-1.2
122,826	+		IAI47_00540	0.20	-0.7
122,834	-		IAI47_00540	0.23	-0.8
122,867	+		IAI47_00540	0.36	-1.3
122,867	+		IAI47_00540	0.36	+0.4
123,061	-				-0.1
123,090	+				-2.1
123,091	-				-0.0
123,101	-				-0.7
123,104	+				-1.5
123,109	+				-0.5
123,163	+				+0.6
123,163	+				+2.1
123,163	+				+0.5
123,164	-				-1.0
123,176	+				+0.6
123,177	-				-0.4
123,180	-				-0.9
123,219	+				+0.5
123,219	+				-1.3
123,219	+				+0.3
123,220	-				-1.5
123,220	-				-1.4
123,224	+				+1.3
123,224	+				+1.9
123,225	-				-0.9
123,225	-				-0.0
123,225	-				-0.9
123,225	-				-0.7
123,225	-				-0.7
123,225	-				-3.1
123,225	-				-1.9
123,233	-				-2.4
123,233	-				-0.5
123,287	+				-0.0
123,287	+				+0.2
123,287	+				-1.2
123,288	-				+0.6
123,288	-				-1.2
123,288	-				-1.3
123,288	-				-0.6
123,302	+				+0.3
123,332	+				-0.7
123,332	+				-0.3
123,333	-				+0.3
123,333	-				-0.5
123,333	-				-0.7
123,333	-				-3.0
123,348	+				-1.6
123,348	+				-1.2
123,348	+				-1.8
123,349	-				-1.4
123,349	-				-0.2
123,357	-				-2.7
123,369	+				+0.1
123,370	-				+0.3
123,370	-				-1.1
123,370	-				-0.3
123,377	+				-0.4
123,378	-				+0.7
123,386	+				+0.3
123,386	+				-0.3
123,387	-				-0.4
123,387	-				-1.5
123,387	-				-0.8
123,387	-				-3.3
123,387	-				-0.0
123,387	-				-2.1
123,387	-				-1.3
123,393	+				-0.3
123,393	+				+1.3
123,394	-				+0.1
123,437	+				-0.0
123,437	+				-0.9
123,438	-				-1.3
123,438	-				-0.9
123,438	-				-1.3
123,441	+				-0.3
123,441	+				-1.6
123,441	+				-1.8
123,441	+				-2.6
123,441	+				-1.6
123,441	+				-0.7
123,442	-				-1.4
123,442	-				+1.9
123,442	-				+2.1
123,442	-				-1.4
123,442	-				-1.3
123,474	-				-0.3
123,513	+		IAI47_00545	0.10	+0.3
123,514	-		IAI47_00545	0.11	-1.4
123,535	-		IAI47_00545	0.16	-1.4
123,535	-		IAI47_00545	0.16	+1.0
123,535	-		IAI47_00545	0.16	-0.7
123,535	-		IAI47_00545	0.16	-1.1
123,535	-		IAI47_00545	0.16	+0.4
123,552	+		IAI47_00545	0.20	-0.1
123,553	-		IAI47_00545	0.20	+0.5
123,581	-		IAI47_00545	0.28	-0.4
123,623	+		IAI47_00545	0.38	-1.7
123,623	+		IAI47_00545	0.38	-2.6
123,623	+		IAI47_00545	0.38	+0.2
123,623	+		IAI47_00545	0.38	+0.1
123,623	+		IAI47_00545	0.38	-2.4
123,623	+		IAI47_00545	0.38	+1.4
123,623	+		IAI47_00545	0.38	-0.3
123,623	+		IAI47_00545	0.38	-2.7
123,623	+		IAI47_00545	0.38	-0.9
123,623	+		IAI47_00545	0.38	-1.2
123,623	+		IAI47_00545	0.38	-0.9
123,624	-		IAI47_00545	0.38	+0.7
123,624	-		IAI47_00545	0.38	+0.7
123,624	-		IAI47_00545	0.38	-0.5
123,624	-		IAI47_00545	0.38	-0.1
123,624	-		IAI47_00545	0.38	-2.4
123,624	-		IAI47_00545	0.38	-1.5
123,624	-		IAI47_00545	0.38	-0.6
123,624	-		IAI47_00545	0.38	+0.4
123,664	+		IAI47_00545	0.48	-0.1
123,664	+		IAI47_00545	0.48	-0.8
123,664	+		IAI47_00545	0.48	-0.1
123,664	+		IAI47_00545	0.48	-0.3
123,665	-		IAI47_00545	0.49	-2.5
123,680	+		IAI47_00545	0.53	-0.8
123,680	+		IAI47_00545	0.53	+1.5
123,680	+		IAI47_00545	0.53	-3.3
123,680	+		IAI47_00545	0.53	-1.1
123,680	+		IAI47_00545	0.53	-0.6
123,680	+		IAI47_00545	0.53	+0.7
123,680	+		IAI47_00545	0.53	-1.1
123,680	+		IAI47_00545	0.53	-2.1
123,680	+		IAI47_00545	0.53	-0.1
123,680	+		IAI47_00545	0.53	-0.1
123,680	+		IAI47_00545	0.53	+0.3
123,681	-		IAI47_00545	0.53	+0.0
123,681	-		IAI47_00545	0.53	-0.6
123,681	-		IAI47_00545	0.53	-1.2
123,681	-		IAI47_00545	0.53	-1.6
123,681	-		IAI47_00545	0.53	+0.2
123,681	-		IAI47_00545	0.53	+4.0
123,681	-		IAI47_00545	0.53	-0.3
123,681	-		IAI47_00545	0.53	+0.2
123,721	-		IAI47_00545	0.63	-1.3
123,721	-		IAI47_00545	0.63	+2.1
123,722	-		IAI47_00545	0.63	-0.6
123,748	+		IAI47_00545	0.70	-0.1
123,748	+		IAI47_00545	0.70	-0.2
123,748	+		IAI47_00545	0.70	-1.4
123,748	+		IAI47_00545	0.70	+1.4
123,748	+		IAI47_00545	0.70	-2.1
123,748	+		IAI47_00545	0.70	+0.7
123,749	-		IAI47_00545	0.70	-1.2
123,749	-		IAI47_00545	0.70	+1.7
123,749	-		IAI47_00545	0.70	-1.4
123,749	-		IAI47_00545	0.70	-1.1
123,749	-		IAI47_00545	0.70	-1.3
123,749	-		IAI47_00545	0.70	-0.8
123,749	-		IAI47_00545	0.70	-1.4
123,804	+		IAI47_00545	0.84	-0.3
123,805	-		IAI47_00545	0.84	-0.7
123,805	-		IAI47_00545	0.84	-1.4
123,812	+		IAI47_00545	0.86	-3.0
123,812	+		IAI47_00545	0.86	+0.3
123,820	+		IAI47_00545	0.88	-2.0
123,820	+		IAI47_00545	0.88	-0.8
123,820	+		IAI47_00545	0.88	-0.9
123,821	-		IAI47_00545	0.88	-0.5
123,821	-		IAI47_00545	0.88	-1.1
123,869	+				-1.0
123,869	+				+0.6
123,869	+				-1.5
123,869	+				-2.3
123,869	+				-1.5
123,869	+				+1.4
123,869	+				+0.1
123,870	-				-1.4
123,870	-				-0.4
123,870	-				-1.7
123,870	-				-0.7
123,870	-				-2.2
123,870	-				+2.1
123,870	-				+0.9
123,870	-				-0.9
123,870	-				+0.3
123,883	+				-1.5
123,883	+				-2.8
123,899	+				-1.0
123,899	+				+0.6
123,899	+				-0.9
123,900	-				+0.7
123,931	+				+0.2
123,931	+				-1.5
123,937	+				-0.3
123,937	+				-0.3
123,938	-				-0.7
123,938	-				-0.3
123,964	+				-0.5