Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03435

Experiment: PYE 25C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 28 days
3,597,645	-		CCNA_03433	0.87	+3.1
3,597,659	+		CCNA_03433	0.88	+0.7
3,597,667	-		CCNA_03433	0.89	-1.4
3,597,668	-		CCNA_03433	0.89	-1.8
3,597,668	-		CCNA_03433	0.89	-1.3
3,597,668	-		CCNA_03433	0.89	-0.9
3,597,694	+				-0.3
3,597,694	+				-0.2
3,597,702	-				-0.4
3,597,716	+				-0.4
3,597,750	+				-0.8
3,597,750	+				+0.8
3,597,761	+				+0.0
3,597,792	-				+0.4
3,597,797	+				+0.1
3,597,797	+				+0.9
3,597,797	+				-1.1
3,597,805	-				-0.9
3,597,805	-				-0.6
3,597,826	+				-0.5
3,597,826	+				+0.5
3,597,828	-				-0.3
3,597,828	-				+1.5
3,597,828	-				-0.7
3,597,835	+				+0.1
3,597,840	+				+1.7
3,597,842	-				-1.7
3,597,855	+				-0.4
3,597,855	-				+1.3
3,597,901	+				-1.0
3,597,911	+				+0.2
3,597,921	+				-0.5
3,597,929	-				-0.9
3,597,946	+		CCNA_03434	0.11	-0.1
3,597,946	+		CCNA_03434	0.11	-1.8
3,597,946	+		CCNA_03434	0.11	+0.6
3,597,946	+		CCNA_03434	0.11	-0.5
3,597,954	-		CCNA_03434	0.12	+2.3
3,597,954	-		CCNA_03434	0.12	-1.3
3,597,972	+		CCNA_03434	0.14	-1.7
3,598,098	-		CCNA_03434	0.30	+1.3
3,598,120	+		CCNA_03434	0.32	-0.9
3,598,123	-		CCNA_03434	0.33	-1.8
3,598,128	-		CCNA_03434	0.33	-2.7
3,598,130	-		CCNA_03434	0.33	-0.3
3,598,130	-		CCNA_03434	0.33	-1.4
3,598,138	-		CCNA_03434	0.34	+0.1
3,598,145	-		CCNA_03434	0.35	-1.4
3,598,175	+		CCNA_03434	0.39	+0.2
3,598,198	+		CCNA_03434	0.42	+0.4
3,598,199	-		CCNA_03434	0.42	-0.0
3,598,208	+		CCNA_03434	0.43	+0.7
3,598,214	+		CCNA_03434	0.44	-0.5
3,598,230	+		CCNA_03434	0.46	+2.3
3,598,230	+		CCNA_03434	0.46	-0.9
3,598,311	-		CCNA_03434	0.56	-2.6
3,598,352	+		CCNA_03434	0.61	-1.9
3,598,352	+		CCNA_03434	0.61	-0.7
3,598,359	-		CCNA_03434	0.62	+0.7
3,598,360	-		CCNA_03434	0.62	+1.3
3,598,360	-		CCNA_03434	0.62	-0.5
3,598,361	+		CCNA_03434	0.62	-4.9
3,598,361	+		CCNA_03434	0.62	+0.4
3,598,406	+		CCNA_03434	0.67	-1.3
3,598,406	+		CCNA_03434	0.67	+1.1
3,598,414	-		CCNA_03434	0.68	-0.0
3,598,420	+		CCNA_03434	0.69	-0.9
3,598,428	+		CCNA_03434	0.70	+1.3
3,598,430	-		CCNA_03434	0.70	+1.0
3,598,459	-		CCNA_03434	0.74	+1.3
3,598,509	-		CCNA_03434	0.80	-0.9
3,598,509	-		CCNA_03434	0.80	-1.4
3,598,513	+		CCNA_03434	0.81	+0.7
3,598,520	+		CCNA_03434	0.81	+0.7
3,598,528	+		CCNA_03434	0.82	-0.8
3,598,536	-		CCNA_03434	0.83	+0.5
3,598,569	-		CCNA_03434	0.87	-0.6
3,598,569	-		CCNA_03434	0.87	+0.7
3,598,573	+		CCNA_03434	0.88	-1.5
3,598,574	-		CCNA_03434	0.88	-1.4
3,598,599	-				-0.7
3,598,607	+				+2.3
3,598,627	+				+0.2
3,598,627	+				+0.2
3,598,627	+				+0.7
3,598,635	-				+0.2
3,598,635	-				+1.3
3,598,635	-				-1.9
3,598,635	-				+0.7
3,598,675	+				-0.5
3,598,683	-				-0.9
3,598,690	+				-0.1
3,598,729	+				-1.4
3,598,731	+				+0.3
3,598,735	+				+0.0
3,598,736	+				-0.0
3,598,743	-				-2.3
3,598,765	+				-1.4
3,598,774	+				-0.2
3,598,785	+		CCNA_03435	0.11	-3.2
3,598,814	+		CCNA_03435	0.13	+0.1
3,598,822	-		CCNA_03435	0.13	-0.0
3,598,822	-		CCNA_03435	0.13	-1.4
3,598,822	-		CCNA_03435	0.13	-0.1
3,598,860	+		CCNA_03435	0.16	+0.5
3,598,897	+		CCNA_03435	0.19	+1.1
3,598,905	-		CCNA_03435	0.20	+0.7
3,598,905	-		CCNA_03435	0.20	+0.6
3,598,924	+		CCNA_03435	0.21	+0.9
3,598,926	-		CCNA_03435	0.21	-0.4
3,598,926	-		CCNA_03435	0.21	-0.1
3,598,946	+		CCNA_03435	0.22	+1.6
3,598,946	-		CCNA_03435	0.22	+0.3
3,598,960	-		CCNA_03435	0.24	-0.9
3,598,960	-		CCNA_03435	0.24	-0.3
3,599,020	+		CCNA_03435	0.28	+0.6
3,599,020	+		CCNA_03435	0.28	+1.5
3,599,040	+		CCNA_03435	0.29	+1.1
3,599,040	+		CCNA_03435	0.29	+0.3
3,599,071	+		CCNA_03435	0.32	+0.3
3,599,082	-		CCNA_03435	0.32	-1.4
3,599,088	+		CCNA_03435	0.33	+1.6
3,599,093	+		CCNA_03435	0.33	-0.2
3,599,106	-		CCNA_03435	0.34	+1.0
3,599,109	+		CCNA_03435	0.34	-1.0
3,599,138	+		CCNA_03435	0.36	-1.0
3,599,138	+		CCNA_03435	0.36	+0.0
3,599,141	-		CCNA_03435	0.37	-0.0
3,599,146	-		CCNA_03435	0.37	+0.9
3,599,175	-		CCNA_03435	0.39	+2.5
3,599,182	+		CCNA_03435	0.40	-0.2
3,599,185	-		CCNA_03435	0.40	-0.3
3,599,205	+		CCNA_03435	0.41	-0.2
3,599,205	+		CCNA_03435	0.41	-1.0
3,599,213	-		CCNA_03435	0.42	-2.0
3,599,213	-		CCNA_03435	0.42	+0.4
3,599,213	-		CCNA_03435	0.42	-0.4
3,599,237	-		CCNA_03435	0.44	+1.3
3,599,239	+		CCNA_03435	0.44	-0.9
3,599,239	+		CCNA_03435	0.44	+0.6
3,599,244	+		CCNA_03435	0.44	+0.5
3,599,244	+		CCNA_03435	0.44	-0.4
3,599,249	+		CCNA_03435	0.45	+1.3
3,599,249	+		CCNA_03435	0.45	+0.7
3,599,286	-		CCNA_03435	0.47	-0.0
3,599,290	+		CCNA_03435	0.48	+0.3
3,599,306	+		CCNA_03435	0.49	+0.7
3,599,306	+		CCNA_03435	0.49	+1.1
3,599,332	+		CCNA_03435	0.51	+1.3
3,599,374	+		CCNA_03435	0.54	+0.2
3,599,404	+		CCNA_03435	0.56	+0.4
3,599,463	+		CCNA_03435	0.60	+0.7
3,599,476	-		CCNA_03435	0.61	+0.9
3,599,476	-		CCNA_03435	0.61	-0.1
3,599,488	-		CCNA_03435	0.62	+0.6
3,599,498	-		CCNA_03435	0.63	-2.6
3,599,519	+		CCNA_03435	0.64	-2.5
3,599,521	+		CCNA_03435	0.64	+1.5
3,599,555	-		CCNA_03435	0.67	-0.5
3,599,582	+		CCNA_03435	0.69	-0.1
3,599,582	+		CCNA_03435	0.69	+0.8
3,599,592	+		CCNA_03435	0.70	-1.2
3,599,594	+		CCNA_03435	0.70	+0.5
3,599,594	+		CCNA_03435	0.70	+1.4
3,599,599	+		CCNA_03435	0.70	+2.3
3,599,600	+		CCNA_03435	0.70	-0.8
3,599,600	-		CCNA_03435	0.70	+2.3
3,599,610	-		CCNA_03435	0.71	+0.4
3,599,638	+		CCNA_03435	0.73	-0.1
3,599,676	+		CCNA_03435	0.76	+0.0
3,599,711	-		CCNA_03435	0.78	+1.0
3,599,738	-		CCNA_03435	0.80	+0.5
3,599,830	-				-1.4
3,599,847	+		CCNA_03435	0.88	+1.5
3,599,878	+				+1.4
3,599,886	-				-1.7
3,599,899	+				-0.9
3,599,967	+				-0.2
3,599,975	-				+0.7
3,600,009	+				+1.0
3,600,040	+				-0.0
3,600,088	+				-0.6
3,600,136	-				-0.7
3,600,145	+				-0.5
3,600,145	+				+1.3
3,600,145	+				+2.8
3,600,145	+				+1.3
3,600,153	-				+0.9
3,600,153	-				-0.8
3,600,156	+				+1.4
3,600,179	+				-0.7
3,600,187	-				+2.3
3,600,206	+				+0.7
3,600,212	+				+0.3
3,600,216	+				-0.6
3,600,288	+		CCNA_03436	0.12	+0.7
3,600,288	+		CCNA_03436	0.12	-0.7
3,600,340	+		CCNA_03436	0.15	+1.8
3,600,340	+		CCNA_03436	0.15	-0.3
3,600,347	+		CCNA_03436	0.15	+0.4
3,600,348	-		CCNA_03436	0.15	-1.7
3,600,348	-		CCNA_03436	0.15	-1.2
3,600,355	-		CCNA_03436	0.15	-0.3
3,600,384	+		CCNA_03436	0.16	-0.0
3,600,384	+		CCNA_03436	0.16	-0.7
3,600,384	+		CCNA_03436	0.16	-0.4
3,600,418	+		CCNA_03436	0.18	-1.8
3,600,476	+		CCNA_03436	0.21	-2.3
3,600,489	-		CCNA_03436	0.21	-0.6
3,600,497	+		CCNA_03436	0.21	-1.4
3,600,524	+		CCNA_03436	0.23	+0.5
3,600,560	+		CCNA_03436	0.24	+1.1
3,600,563	-		CCNA_03436	0.24	-0.5
3,600,575	+		CCNA_03436	0.25	-0.4
3,600,626	+		CCNA_03436	0.27	+0.3
3,600,634	-		CCNA_03436	0.27	-0.3
3,600,648	-		CCNA_03436	0.28	-2.3
3,600,648	-		CCNA_03436	0.28	-0.8
3,600,721	+		CCNA_03436	0.31	+1.5
3,600,761	+		CCNA_03436	0.33	+0.9
3,600,772	+		CCNA_03436	0.33	+0.1
3,600,774	-		CCNA_03436	0.34	-0.1
3,600,811	+		CCNA_03436	0.35	-0.6
3,600,816	+		CCNA_03436	0.35	-0.2
3,600,843	+		CCNA_03436	0.37	-0.8
3,600,886	+		CCNA_03436	0.38	-0.8
3,600,916	-		CCNA_03436	0.40	+0.3
3,600,931	-		CCNA_03436	0.40	-0.3
3,600,972	-		CCNA_03436	0.42	-0.6
3,601,005	-		CCNA_03436	0.44	-0.3