Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03227

Experiment: PYE 25C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 25C survival rep1 28 days
3,388,895	+		CCNA_03226	0.40	-0.1
3,388,906	-		CCNA_03226	0.41	-1.0
3,388,947	+		CCNA_03226	0.44	-1.7
3,388,947	+		CCNA_03226	0.44	+2.3
3,388,947	+		CCNA_03226	0.44	-0.2
3,388,947	+		CCNA_03226	0.44	-1.3
3,388,947	+		CCNA_03226	0.44	-1.2
3,388,947	+		CCNA_03226	0.44	-1.2
3,388,952	+		CCNA_03226	0.44	+2.3
3,388,955	-		CCNA_03226	0.45	-1.2
3,388,955	-		CCNA_03226	0.45	+0.3
3,388,955	-		CCNA_03226	0.45	+3.8
3,388,955	-		CCNA_03226	0.45	+1.4
3,388,960	-		CCNA_03226	0.45	-1.3
3,388,976	+		CCNA_03226	0.46	-2.3
3,388,976	+		CCNA_03226	0.46	+0.3
3,388,976	+		CCNA_03226	0.46	+3.3
3,388,979	-		CCNA_03226	0.46	-1.1
3,388,981	+		CCNA_03226	0.47	+0.3
3,388,981	+		CCNA_03226	0.47	-2.4
3,388,984	-		CCNA_03226	0.47	-0.6
3,388,989	-		CCNA_03226	0.47	-0.5
3,389,074	-		CCNA_03226	0.54	-0.1
3,389,183	-		CCNA_03226	0.62	-1.3
3,389,203	-		CCNA_03226	0.63	-1.9
3,389,237	-		CCNA_03226	0.66	-0.5
3,389,265	+		CCNA_03226	0.68	-1.4
3,389,265	+		CCNA_03226	0.68	+0.3
3,389,265	+		CCNA_03226	0.68	-0.1
3,389,265	+		CCNA_03226	0.68	-2.8
3,389,272	+		CCNA_03226	0.69	-3.6
3,389,273	-		CCNA_03226	0.69	-0.7
3,389,273	-		CCNA_03226	0.69	-0.3
3,389,273	-		CCNA_03226	0.69	-0.4
3,389,273	-		CCNA_03226	0.69	+0.5
3,389,273	-		CCNA_03226	0.69	+0.7
3,389,273	-		CCNA_03226	0.69	+1.2
3,389,273	-		CCNA_03226	0.69	-0.2
3,389,273	-		CCNA_03226	0.69	+0.2
3,389,273	-		CCNA_03226	0.69	-1.1
3,389,275	+		CCNA_03226	0.69	+1.6
3,389,285	+		CCNA_03226	0.70	-1.5
3,389,293	-		CCNA_03226	0.70	-0.1
3,389,301	+		CCNA_03226	0.71	-0.4
3,389,365	-		CCNA_03226	0.76	+0.4
3,389,387	+		CCNA_03226	0.77	+3.3
3,389,402	+		CCNA_03226	0.79	-0.1
3,389,402	+		CCNA_03226	0.79	+3.3
3,389,405	-		CCNA_03226	0.79	-1.3
3,389,410	-		CCNA_03226	0.79	-0.1
3,389,414	+		CCNA_03226	0.79	-0.9
3,389,455	+		CCNA_03226	0.83	-0.3
3,389,463	-		CCNA_03226	0.83	+1.7
3,389,495	+		CCNA_03226	0.86	+0.7
3,389,496	+		CCNA_03226	0.86	-1.0
3,389,497	-		CCNA_03226	0.86	-1.2
3,389,533	-		CCNA_03226	0.89	+0.8
3,389,534	-		CCNA_03226	0.89	+0.3
3,389,556	-				+0.8
3,389,571	-				+0.8
3,389,579	-				+2.7
3,389,615	+				-1.4
3,389,615	+				+0.7
3,389,615	+				-1.2
3,389,615	+				-1.7
3,389,623	-				-2.1
3,389,623	-				+2.3
3,389,623	-				+2.1
3,389,623	-				-0.3
3,389,623	-				-0.2
3,389,623	-				-0.3
3,389,630	+				+1.6
3,389,630	+				+1.3
3,389,630	+				+0.0
3,389,638	-				+0.1
3,389,646	+				-1.4
3,389,647	-				+3.3
3,389,654	-				-0.2
3,389,654	-				-1.0
3,389,655	-				+0.5
3,389,661	+				-0.2
3,389,676	-				-0.8
3,389,676	-				-1.0
3,389,697	+				-2.0
3,389,697	+				+2.3
3,389,736	+				+2.3
3,389,759	-				-1.7
3,389,774	-				-0.0
3,389,785	-				+0.3
3,389,787	+				-0.7
3,389,787	+				+0.7
3,389,787	+				-1.7
3,389,787	+				-1.6
3,389,787	+				-0.6
3,389,787	+				+0.3
3,389,787	+				+2.3
3,389,787	+				+2.3
3,389,793	-				-0.2
3,389,795	-				-0.4
3,389,795	-				+1.0
3,389,795	-				+0.6
3,389,795	-				+1.2
3,389,795	-				+0.4
3,389,795	-				+0.8
3,389,795	-				+0.9
3,389,795	-				+1.5
3,389,795	-				+0.7
3,389,795	-				+0.3
3,389,795	-				+0.4
3,389,795	-				+0.4
3,389,795	-				+0.9
3,389,795	-				+1.0
3,389,795	-				-0.9
3,389,795	-				+1.1
3,389,795	-				+0.5
3,389,795	-				+0.9
3,389,795	-				+0.7
3,389,795	-				+0.8
3,389,834	+				-2.6
3,389,834	+				-3.0
3,389,834	+				-1.0
3,389,841	-				-0.2
3,389,841	-				+0.8
3,389,842	-				-3.0
3,389,890	-				+0.4
3,389,891	+				+0.3
3,389,891	+				-2.1
3,389,904	-				+0.0
3,389,906	+				+2.3
3,389,924	+				+0.3
3,389,936	-				+1.2
3,389,974	-		CCNA_03227	0.10	+1.3
3,389,983	-		CCNA_03227	0.10	+0.2
3,390,008	-		CCNA_03227	0.11	+1.3
3,390,010	+		CCNA_03227	0.12	+0.2
3,390,018	-		CCNA_03227	0.12	-0.4
3,390,035	+		CCNA_03227	0.13	+0.2
3,390,043	-		CCNA_03227	0.13	-0.3
3,390,043	-		CCNA_03227	0.13	+0.5
3,390,071	-		CCNA_03227	0.14	-0.1
3,390,078	-		CCNA_03227	0.14	-0.7
3,390,129	+		CCNA_03227	0.16	+0.6
3,390,144	-		CCNA_03227	0.17	-0.3
3,390,160	+		CCNA_03227	0.18	-0.2
3,390,193	-		CCNA_03227	0.19	+2.2
3,390,210	+		CCNA_03227	0.20	+0.2
3,390,233	+		CCNA_03227	0.21	-1.0
3,390,241	-		CCNA_03227	0.21	+0.4
3,390,270	-		CCNA_03227	0.22	+0.2
3,390,276	+		CCNA_03227	0.23	-1.6
3,390,276	+		CCNA_03227	0.23	+2.2
3,390,276	+		CCNA_03227	0.23	-1.5
3,390,276	+		CCNA_03227	0.23	-2.3
3,390,276	+		CCNA_03227	0.23	+0.0
3,390,276	+		CCNA_03227	0.23	-1.3
3,390,284	-		CCNA_03227	0.23	+0.2
3,390,284	-		CCNA_03227	0.23	-2.6
3,390,284	-		CCNA_03227	0.23	+0.1
3,390,284	-		CCNA_03227	0.23	-1.1
3,390,301	+		CCNA_03227	0.24	+0.2
3,390,324	+		CCNA_03227	0.25	-1.2
3,390,358	+		CCNA_03227	0.26	-0.9
3,390,359	-		CCNA_03227	0.26	+0.4
3,390,368	-		CCNA_03227	0.26	-1.3
3,390,368	-		CCNA_03227	0.26	+1.5
3,390,368	-		CCNA_03227	0.26	+1.2
3,390,368	-		CCNA_03227	0.26	-0.3
3,390,400	-		CCNA_03227	0.28	+0.3
3,390,416	-		CCNA_03227	0.28	+0.7
3,390,462	+		CCNA_03227	0.30	+2.8
3,390,462	+		CCNA_03227	0.30	+1.2
3,390,462	+		CCNA_03227	0.30	-0.9
3,390,470	-		CCNA_03227	0.31	+1.4
3,390,470	-		CCNA_03227	0.31	+0.1
3,390,495	+		CCNA_03227	0.32	-1.9
3,390,503	-		CCNA_03227	0.32	+2.9
3,390,503	-		CCNA_03227	0.32	+1.0
3,390,503	-		CCNA_03227	0.32	+0.7
3,390,504	-		CCNA_03227	0.32	-3.0
3,390,510	+		CCNA_03227	0.32	-0.1
3,390,510	+		CCNA_03227	0.32	-1.7
3,390,518	-		CCNA_03227	0.33	+0.7
3,390,520	+		CCNA_03227	0.33	-1.1
3,390,544	-		CCNA_03227	0.34	+1.4
3,390,553	+		CCNA_03227	0.34	+3.8
3,390,590	-		CCNA_03227	0.36	-0.6
3,390,600	-		CCNA_03227	0.36	+0.4
3,390,602	+		CCNA_03227	0.36	+0.2
3,390,602	+		CCNA_03227	0.36	-1.6
3,390,604	-		CCNA_03227	0.36	+0.0
3,390,616	-		CCNA_03227	0.37	+2.4
3,390,638	-		CCNA_03227	0.38	-0.0
3,390,654	+		CCNA_03227	0.38	-1.8
3,390,668	-		CCNA_03227	0.39	+1.1
3,390,727	+		CCNA_03227	0.41	-1.1
3,390,727	+		CCNA_03227	0.41	+0.2
3,390,735	-		CCNA_03227	0.42	-1.6
3,390,754	-		CCNA_03227	0.43	-2.0
3,390,760	+		CCNA_03227	0.43	-0.6
3,390,775	+		CCNA_03227	0.43	-1.8
3,390,779	-		CCNA_03227	0.44	+0.3
3,390,801	-		CCNA_03227	0.45	-0.2
3,390,818	+		CCNA_03227	0.45	-0.1
3,390,818	+		CCNA_03227	0.45	+0.7
3,390,826	-				-1.5
3,390,827	-		CCNA_03227	0.46	+0.1
3,390,827	-		CCNA_03227	0.46	-0.3
3,390,909	+		CCNA_03227	0.49	-0.5
3,390,934	+		CCNA_03227	0.50	-0.8
3,390,971	+		CCNA_03227	0.52	-1.7
3,390,984	-		CCNA_03227	0.52	-2.4
3,391,002	+		CCNA_03227	0.53	-1.5
3,391,010	-		CCNA_03227	0.53	-0.4
3,391,029	+		CCNA_03227	0.54	+2.2
3,391,042	-		CCNA_03227	0.55	-0.3
3,391,048	-		CCNA_03227	0.55	-2.7
3,391,118	-		CCNA_03227	0.58	+0.6
3,391,119	-				+0.1
3,391,125	-		CCNA_03227	0.58	-2.5
3,391,160	+		CCNA_03227	0.60	-2.8
3,391,168	-		CCNA_03227	0.60	+0.7
3,391,168	-		CCNA_03227	0.60	+2.4
3,391,179	+		CCNA_03227	0.60	+1.2
3,391,179	+		CCNA_03227	0.60	-2.9
3,391,181	-		CCNA_03227	0.60	-0.9
3,391,187	-		CCNA_03227	0.61	-1.3
3,391,187	-		CCNA_03227	0.61	-0.1
3,391,187	-		CCNA_03227	0.61	-1.2
3,391,187	-		CCNA_03227	0.61	+1.6
3,391,187	-		CCNA_03227	0.61	+0.7
3,391,187	-		CCNA_03227	0.61	-0.8
3,391,208	-		CCNA_03227	0.62	+1.0
3,391,215	+		CCNA_03227	0.62	+1.0
3,391,223	-		CCNA_03227	0.62	-0.9
3,391,224	+		CCNA_03227	0.62	-0.8
3,391,245	-		CCNA_03227	0.63	+2.2
3,391,282	+		CCNA_03227	0.65	-1.6
3,391,282	+		CCNA_03227	0.65	-1.1
3,391,288	-		CCNA_03227	0.65	-1.1
3,391,290	-		CCNA_03227	0.65	+1.5
3,391,290	-		CCNA_03227	0.65	+3.2
3,391,290	-		CCNA_03227	0.65	-2.8
3,391,309	-		CCNA_03227	0.66	+0.5
3,391,314	-		CCNA_03227	0.66	+2.2
3,391,336	+		CCNA_03227	0.67	+1.0
3,391,343	+		CCNA_03227	0.67	-2.2
3,391,345	-		CCNA_03227	0.67	+0.1
3,391,350	-		CCNA_03227	0.68	+3.2
3,391,351	-		CCNA_03227	0.68	+0.3
3,391,355	+		CCNA_03227	0.68	+0.2
3,391,355	+		CCNA_03227	0.68	+0.2
3,391,363	-		CCNA_03227	0.68	+0.1
3,391,363	-		CCNA_03227	0.68	+0.1
3,391,363	-		CCNA_03227	0.68	+0.3
3,391,423	+		CCNA_03227	0.71	-1.2
3,391,423	+		CCNA_03227	0.71	+0.5
3,391,423	+		CCNA_03227	0.71	-2.1
3,391,431	-		CCNA_03227	0.71	+0.2
3,391,431	-		CCNA_03227	0.71	-1.1
3,391,474	+		CCNA_03227	0.73	+0.1
3,391,482	-		CCNA_03227	0.73	-0.2
3,391,489	+		CCNA_03227	0.73	+2.2
3,391,497	-		CCNA_03227	0.74	+1.2
3,391,526	-		CCNA_03227	0.75	+1.9
3,391,529	+				+2.2
3,391,539	-		CCNA_03227	0.75	-1.3
3,391,558	+		CCNA_03227	0.76	+1.5
3,391,558	+		CCNA_03227	0.76	-0.5
3,391,563	+		CCNA_03227	0.76	-1.5
3,391,571	-		CCNA_03227	0.77	-1.0
3,391,571	-		CCNA_03227	0.77	-1.0
3,391,571	-		CCNA_03227	0.77	+1.1
3,391,580	+		CCNA_03227	0.77	-1.8
3,391,587	-		CCNA_03227	0.77	+1.5
3,391,605	+		CCNA_03227	0.78	-1.6
3,391,628	-		CCNA_03227	0.79	+0.3
3,391,635	+		CCNA_03227	0.79	-0.8
3,391,635	+		CCNA_03227	0.79	+0.7
3,391,643	-		CCNA_03227	0.80	+0.2
3,391,650	-		CCNA_03227	0.80	+0.3
3,391,661	+		CCNA_03227	0.81	-1.1
3,391,661	-		CCNA_03227	0.81	-1.0
3,391,695	-		CCNA_03227	0.82	-0.5
3,391,700	-		CCNA_03227	0.82	+2.1
3,391,711	-		CCNA_03227	0.83	-1.2
3,391,718	-		CCNA_03227	0.83	+0.2
3,391,729	+		CCNA_03227	0.83	+1.2
3,391,732	+		CCNA_03227	0.84	+1.0
3,391,735	-		CCNA_03227	0.84	+1.0
3,391,823	+		CCNA_03227	0.87	-3.1
3,391,829	+		CCNA_03227	0.88	+0.2
3,391,831	-		CCNA_03227	0.88	+0.0
3,391,831	-		CCNA_03227	0.88	-2.3
3,391,846	+		CCNA_03227	0.88	+2.2
3,391,854	-		CCNA_03227	0.89	+1.4
3,391,861	+		CCNA_03227	0.89	-1.2
3,391,862	-		CCNA_03227	0.89	-1.3
3,391,869	-		CCNA_03227	0.89	-0.1
3,391,879	-		CCNA_03227	0.90	+1.5
3,391,880	-		CCNA_03227	0.90	+0.7
3,391,880	-		CCNA_03227	0.90	+0.4
3,391,915	+				-0.8
3,391,915	+				-2.2
3,391,921	+				-2.5
3,391,945	-				+5.1
3,391,987	-				-0.9
3,391,987	-				+0.7
3,391,987	-				-1.2
3,392,020	+				-1.3
3,392,020	+				-0.6
3,392,023	-				+1.3
3,392,023	-				-0.5
3,392,023	-				-0.3
3,392,030	+				-0.7
3,392,043	-				+0.0
3,392,046	+				-1.1
3,392,064	-				+0.4
3,392,066	+				-0.1
3,392,082	+				-0.8
3,392,082	+				-2.4
3,392,090	-				+1.0
3,392,108	+				-0.6
3,392,135	-				+0.6
3,392,145	-				+1.8
3,392,145	-				+0.2
3,392,152	-				-1.3
3,392,241	+				-1.0
3,392,249	-				+0.4
3,392,249	-				-0.8
3,392,281	+				-0.9
3,392,324	-				-1.3
3,392,343	+				-1.9
3,392,381	+				-0.8
3,392,389	-				+0.0
3,392,389	-				-1.2
3,392,438	+				+0.6
3,392,460	+		CCNA_03228	0.10	-0.3
3,392,478	-		CCNA_03228	0.11	-0.6
3,392,505	+		CCNA_03228	0.12	-0.3
3,392,505	+		CCNA_03228	0.12	+0.0
3,392,529	+		CCNA_03228	0.14	+1.2
3,392,561	+		CCNA_03228	0.15	+1.2
3,392,600	+		CCNA_03228	0.17	+0.4
3,392,608	-		CCNA_03228	0.17	+2.0
3,392,608	-		CCNA_03228	0.17	+0.9
3,392,613	+		CCNA_03228	0.18	-1.2
3,392,631	+		CCNA_03228	0.19	+0.7
3,392,639	-		CCNA_03228	0.19	-1.6
3,392,697	+		CCNA_03228	0.22	-0.3
3,392,702	+		CCNA_03228	0.22	-0.9
3,392,705	-		CCNA_03228	0.22	-0.1
3,392,710	-		CCNA_03228	0.22	-1.4
3,392,710	-		CCNA_03228	0.22	-0.3
3,392,710	-		CCNA_03228	0.22	+0.4
3,392,710	-		CCNA_03228	0.22	+0.6
3,392,711	+		CCNA_03228	0.23	+0.7
3,392,720	-		CCNA_03228	0.23	+2.4
3,392,720	-		CCNA_03228	0.23	-1.0
3,392,725	-		CCNA_03228	0.23	-1.5
3,392,760	-		CCNA_03228	0.25	-2.3
3,392,770	+		CCNA_03228	0.25	-0.2
3,392,770	+		CCNA_03228	0.25	+0.3
3,392,780	+		CCNA_03228	0.26	+0.3
3,392,788	-		CCNA_03228	0.26	-0.5
3,392,800	-		CCNA_03228	0.27	+1.2
3,392,810	-		CCNA_03228	0.27	-0.3
3,392,815	+		CCNA_03228	0.28	+1.9
3,392,823	-		CCNA_03228	0.28	-3.0
3,392,859	+		CCNA_03228	0.30	+0.2
3,392,867	-		CCNA_03228	0.30	+0.1
3,392,941	+		CCNA_03228	0.34	-0.9
3,392,956	+		CCNA_03228	0.35	-1.5
3,392,963	-		CCNA_03228	0.35	-0.0
3,392,963	-		CCNA_03228	0.35	-0.7
3,392,964	-		CCNA_03228	0.35	-0.1
3,392,978	-		CCNA_03228	0.36	-1.1
3,392,983	-		CCNA_03228	0.36	+0.3
3,392,989	-		CCNA_03228	0.36	-0.9
3,392,991	+				-0.1
3,393,025	+		CCNA_03228	0.38	-1.2
3,393,025	+		CCNA_03228	0.38	-3.2
3,393,030	+		CCNA_03228	0.38	-0.9
3,393,030	+		CCNA_03228	0.38	-0.8
3,393,030	+		CCNA_03228	0.38	-0.5
3,393,033	-		CCNA_03228	0.38	+0.1
3,393,038	-		CCNA_03228	0.39	+1.2
3,393,038	-		CCNA_03228	0.39	-0.2
3,393,038	-		CCNA_03228	0.39	-1.0
3,393,038	-		CCNA_03228	0.39	-0.5
3,393,038	-		CCNA_03228	0.39	-0.8
3,393,038	-		CCNA_03228	0.39	+0.5
3,393,038	-		CCNA_03228	0.39	+0.2
3,393,038	-		CCNA_03228	0.39	+0.2
3,393,038	-		CCNA_03228	0.39	-0.3
3,393,061	+		CCNA_03228	0.40	-0.7
3,393,069	-		CCNA_03228	0.40	+0.0
3,393,073	+		CCNA_03228	0.40	+0.2
3,393,078	+		CCNA_03228	0.41	-0.9
3,393,086	-		CCNA_03228	0.41	+0.8
3,393,105	-		CCNA_03228	0.42	-1.6
3,393,107	-		CCNA_03228	0.42	-2.7
3,393,112	+		CCNA_03228	0.42	+0.5