Experiment: Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt slt and DVUA0126 are separated by 373 nucleotides DVUA0126 and DORF2161 are separated by 59 nucleotides
DVUA0125: slt - transglycosylase, SLT family (TIGR), at 163,070 to 164,422
slt
DVUA0126: DVUA0126 - conserved hypothetical protein (TIGR), at 164,796 to 165,263
DVUA0126
DORF2161: DORF2161 - SEED: FIG00606767: hypothetical protein, at 165,323 to 167,803
DORF2161
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.824 kb on + strand, within slt at 163.848 kb on + strand, within slt at 163.958 kb on - strand, within slt at 163.975 kb on - strand, within slt at 164.097 kb on + strand, within slt at 164.180 kb on - strand, within slt at 164.428 kb on + strand at 164.428 kb on + strand at 164.522 kb on + strand at 164.530 kb on - strand at 164.679 kb on - strand at 164.859 kb on + strand, within DVUA0126 at 164.919 kb on + strand, within DVUA0126 at 164.927 kb on - strand, within DVUA0126 at 165.000 kb on + strand, within DVUA0126 at 165.011 kb on + strand, within DVUA0126 at 165.127 kb on + strand, within DVUA0126 at 165.128 kb on + strand, within DVUA0126 at 165.139 kb on + strand, within DVUA0126 at 165.149 kb on - strand, within DVUA0126 at 165.184 kb on - strand, within DVUA0126 at 165.184 kb on - strand, within DVUA0126 at 165.204 kb on - strand, within DVUA0126 at 165.290 kb on + strand at 165.300 kb on - strand at 165.300 kb on - strand at 165.403 kb on - strand at 165.442 kb on + strand at 165.444 kb on + strand at 165.460 kb on - strand at 165.502 kb on + strand at 165.510 kb on - strand at 165.596 kb on + strand, within DORF2161 at 165.677 kb on - strand, within DORF2161 at 165.694 kb on + strand, within DORF2161 at 165.694 kb on + strand, within DORF2161 at 165.694 kb on + strand, within DORF2161 at 165.774 kb on - strand, within DORF2161 at 165.775 kb on - strand, within DORF2161 at 165.796 kb on + strand, within DORF2161 at 165.799 kb on - strand, within DORF2161 at 165.815 kb on + strand, within DORF2161 at 165.820 kb on + strand, within DORF2161 at 165.828 kb on - strand, within DORF2161 at 165.938 kb on - strand, within DORF2161 at 165.942 kb on + strand, within DORF2161 at 165.993 kb on - strand, within DORF2161 at 166.017 kb on - strand, within DORF2161 at 166.017 kb on - strand, within DORF2161 at 166.021 kb on + strand, within DORF2161 at 166.021 kb on - strand, within DORF2161 at 166.040 kb on - strand, within DORF2161 at 166.178 kb on - strand, within DORF2161 at 166.218 kb on - strand, within DORF2161 at 166.230 kb on + strand, within DORF2161
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM remove 163,824 + slt DVUA0125 0.56 -1.5 163,848 + slt DVUA0125 0.58 -0.0 163,958 - slt DVUA0125 0.66 -1.2 163,975 - slt DVUA0125 0.67 +0.3 164,097 + slt DVUA0125 0.76 +0.8 164,180 - slt DVUA0125 0.82 +0.3 164,428 + -0.1 164,428 + +1.0 164,522 + -1.3 164,530 - -0.7 164,679 - -0.1 164,859 + DVUA0126 0.13 -0.3 164,919 + DVUA0126 0.26 +0.2 164,927 - DVUA0126 0.28 -0.4 165,000 + DVUA0126 0.44 +1.2 165,011 + DVUA0126 0.46 -0.8 165,127 + DVUA0126 0.71 +0.4 165,128 + DVUA0126 0.71 +1.0 165,139 + DVUA0126 0.73 +0.2 165,149 - DVUA0126 0.75 +0.3 165,184 - DVUA0126 0.83 +0.1 165,184 - DVUA0126 0.83 -0.5 165,204 - DVUA0126 0.87 +0.2 165,290 + -0.0 165,300 - -0.1 165,300 - -0.1 165,403 - -2.4 165,442 + +0.1 165,444 + +0.4 165,460 - +0.0 165,502 + -0.1 165,510 - +0.5 165,596 + DORF2161 0.11 +0.4 165,677 - DORF2161 0.14 +0.3 165,694 + DORF2161 0.15 +0.0 165,694 + DORF2161 0.15 -0.2 165,694 + DORF2161 0.15 +2.1 165,774 - DORF2161 0.18 -0.2 165,775 - DORF2161 0.18 +0.7 165,796 + DORF2161 0.19 -0.1 165,799 - DORF2161 0.19 -0.5 165,815 + DORF2161 0.20 -1.0 165,820 + DORF2161 0.20 +1.6 165,828 - DORF2161 0.20 -0.1 165,938 - DORF2161 0.25 -0.2 165,942 + DORF2161 0.25 +0.2 165,993 - DORF2161 0.27 +0.3 166,017 - DORF2161 0.28 -0.2 166,017 - DORF2161 0.28 +0.2 166,021 + DORF2161 0.28 -1.0 166,021 - DORF2161 0.28 +0.2 166,040 - DORF2161 0.29 +0.0 166,178 - DORF2161 0.34 -0.2 166,218 - DORF2161 0.36 -0.9 166,230 + DORF2161 0.37 +0.7
Or see this region's nucleotide sequence