Experiment: Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lytS and DVU0598 are separated by 203 nucleotides DVU0598 and DVU0599 are separated by 326 nucleotides
DVU0597: lytS - regulatory protein LytS (TIGR), at 665,371 to 667,086
lytS
DVU0598: DVU0598 - carbon starvation protein A, putative (TIGR), at 667,290 to 668,711
DVU0598
DVU0599: DVU0599 - carbon starvation protein A, putative (TIGR), at 669,038 to 670,459
DVU0599
Position (kb) 667
668
669 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 666.296 kb on - strand, within lytS at 666.331 kb on + strand, within lytS at 666.350 kb on + strand, within lytS at 666.447 kb on + strand, within lytS at 666.477 kb on - strand, within lytS at 666.527 kb on + strand, within lytS at 666.639 kb on - strand, within lytS at 666.715 kb on + strand, within lytS at 666.722 kb on + strand, within lytS at 666.762 kb on - strand, within lytS at 666.876 kb on - strand, within lytS at 666.876 kb on - strand, within lytS at 666.899 kb on - strand, within lytS at 666.903 kb on + strand, within lytS at 666.911 kb on - strand, within lytS at 666.932 kb on + strand at 667.089 kb on - strand at 667.355 kb on - strand at 667.411 kb on - strand at 667.531 kb on - strand, within DVU0598 at 667.541 kb on + strand, within DVU0598 at 667.559 kb on - strand, within DVU0598 at 667.663 kb on + strand, within DVU0598 at 667.685 kb on + strand, within DVU0598 at 667.719 kb on + strand, within DVU0598 at 667.743 kb on - strand, within DVU0598 at 667.941 kb on - strand, within DVU0598 at 667.958 kb on + strand, within DVU0598 at 668.357 kb on + strand, within DVU0598 at 668.357 kb on + strand, within DVU0598 at 668.561 kb on - strand, within DVU0598 at 668.561 kb on - strand, within DVU0598 at 668.743 kb on - strand at 668.815 kb on - strand at 668.853 kb on - strand at 669.077 kb on - strand at 669.095 kb on + strand at 669.095 kb on + strand at 669.095 kb on + strand at 669.095 kb on + strand at 669.180 kb on + strand at 669.223 kb on - strand, within DVU0599 at 669.247 kb on + strand, within DVU0599 at 669.274 kb on - strand, within DVU0599 at 669.279 kb on - strand, within DVU0599 at 669.287 kb on + strand, within DVU0599 at 669.297 kb on - strand, within DVU0599 at 669.421 kb on + strand, within DVU0599 at 669.421 kb on + strand, within DVU0599 at 669.510 kb on + strand, within DVU0599 at 669.511 kb on + strand, within DVU0599 at 669.566 kb on + strand, within DVU0599 at 669.566 kb on + strand, within DVU0599 at 669.626 kb on - strand, within DVU0599 at 669.638 kb on + strand, within DVU0599 at 669.667 kb on - strand, within DVU0599 at 669.672 kb on - strand, within DVU0599 at 669.673 kb on + strand, within DVU0599 at 669.679 kb on - strand, within DVU0599
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM remove 666,296 - lytS DVU0597 0.54 -0.9 666,331 + lytS DVU0597 0.56 -2.0 666,350 + lytS DVU0597 0.57 -2.2 666,447 + lytS DVU0597 0.63 -1.5 666,477 - lytS DVU0597 0.64 -1.3 666,527 + lytS DVU0597 0.67 -1.1 666,639 - lytS DVU0597 0.74 -1.6 666,715 + lytS DVU0597 0.78 +0.5 666,722 + lytS DVU0597 0.79 -1.2 666,762 - lytS DVU0597 0.81 +1.2 666,876 - lytS DVU0597 0.88 -1.7 666,876 - lytS DVU0597 0.88 -1.4 666,899 - lytS DVU0597 0.89 -2.3 666,903 + lytS DVU0597 0.89 -1.5 666,911 - lytS DVU0597 0.90 -4.1 666,932 + -0.4 667,089 - -2.0 667,355 - +1.2 667,411 - -0.8 667,531 - DVU0598 0.17 -0.9 667,541 + DVU0598 0.18 +1.3 667,559 - DVU0598 0.19 +0.7 667,663 + DVU0598 0.26 -0.6 667,685 + DVU0598 0.28 +1.0 667,719 + DVU0598 0.30 +0.1 667,743 - DVU0598 0.32 -0.3 667,941 - DVU0598 0.46 -0.2 667,958 + DVU0598 0.47 +1.4 668,357 + DVU0598 0.75 +0.2 668,357 + DVU0598 0.75 -0.4 668,561 - DVU0598 0.89 -0.2 668,561 - DVU0598 0.89 -0.0 668,743 - -0.9 668,815 - +0.1 668,853 - -0.8 669,077 - -0.6 669,095 + -1.0 669,095 + -2.1 669,095 + -1.0 669,095 + -1.4 669,180 + -0.5 669,223 - DVU0599 0.13 -1.3 669,247 + DVU0599 0.15 -0.7 669,274 - DVU0599 0.17 -1.4 669,279 - DVU0599 0.17 -1.0 669,287 + DVU0599 0.18 -1.7 669,297 - DVU0599 0.18 -1.7 669,421 + DVU0599 0.27 +0.3 669,421 + DVU0599 0.27 -0.6 669,510 + DVU0599 0.33 -0.8 669,511 + DVU0599 0.33 -0.2 669,566 + DVU0599 0.37 -2.2 669,566 + DVU0599 0.37 -1.3 669,626 - DVU0599 0.41 -2.0 669,638 + DVU0599 0.42 +0.7 669,667 - DVU0599 0.44 -1.5 669,672 - DVU0599 0.45 -1.4 669,673 + DVU0599 0.45 -1.8 669,679 - DVU0599 0.45 -1.4
Or see this region's nucleotide sequence